Guide to the Human Genome
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Name: CHST10 Sequence: fasta or formatted (356aa) NCBI GI: 4758540
Description:

HNK-1 sulfotransferase

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         13           2
 C cysteine            1.7          6           1
 D aspartate           5.9         21           2
 E glutamate           7.3         26           2
 F phenylalanine       7.6         27           2
 G glycine             3.9         14           1
 H histidine           4.5         16           2
 I isoleucine          7.3         26           2
 K lysine              7.3         26           2
 L leucine             9.8         35           3
 M methionine          1.7          6           1
 N asparagine          3.1         11           1
 P proline             6.2         22           2
 Q glutamine           2.8         10           1
 R arginine            6.5         23           2
 S serine              3.9         14           2
 T threonine           4.5         16           2
 V valine              6.7         24           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HNK-1 sulfotransferase 
CHST11                0.188   carbohydrate sulfotransferase 11 
CHST9                 0.184   GalNAc-4-sulfotransferase 2 
CHST8                 0.177   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.177   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.177   carbohydrate (N-acetylgalactosamine 4-0) sulfotransf...
CHST13                0.153   carbohydrate sulfotransferase 13 
CHST12                0.142   carbohydrate sulfotransferase 12 
CHST14                0.124   dermatan 4 sulfotransferase 1 
AKAP13                0.010   A-kinase anchor protein 13 isoform 1 
AKAP13                0.010   A-kinase anchor protein 13 isoform 3 
AKAP13                0.010   A-kinase anchor protein 13 isoform 2 
CEP290                0.008   centrosomal protein 290kDa 
KLHL11                0.008   kelch-like 11 
OSCP1                 0.007   oxidored-nitro domain-containing protein isoform 1 [...
CHD1                  0.007   chromodomain helicase DNA binding protein 1 
SLC35F5               0.006   solute carrier family 35, member F5 
YLPM1                 0.006   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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