Guide to the Human Genome
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Name: CHST14 Sequence: fasta or formatted (376aa) NCBI GI: 18497304
Description:

dermatan 4 sulfotransferase 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         34           2
 C cysteine            1.9          7           1
 D aspartate           5.1         19           2
 E glutamate           5.3         20           2
 F phenylalanine       3.7         14           1
 G glycine             6.4         24           2
 H histidine           2.7         10           1
 I isoleucine          2.1          8           1
 K lysine              2.9         11           1
 L leucine            13.0         49           3
 M methionine          2.7         10           1
 N asparagine          1.9          7           1
 P proline             9.8         37           2
 Q glutamine           3.5         13           2
 R arginine           11.2         42           2
 S serine              4.0         15           2
 T threonine           1.6          6           1
 V valine              7.2         27           1
 W tryptophan          1.6          6           1
 Y tyrosine            4.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dermatan 4 sulfotransferase 1 
CHST11                0.207   carbohydrate sulfotransferase 11 
CHST8                 0.180   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.180   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.180   carbohydrate (N-acetylgalactosamine 4-0) sulfotransf...
CHST13                0.176   carbohydrate sulfotransferase 13 
CHST12                0.172   carbohydrate sulfotransferase 12 
CHST9                 0.158   GalNAc-4-sulfotransferase 2 
CHST10                0.118   HNK-1 sulfotransferase 
LOC100292600          0.013   PREDICTED: hypothetical protein 
LOC100290191          0.013   PREDICTED: hypothetical protein XP_002346744 
LOC100289641          0.013   PREDICTED: hypothetical protein XP_002342602 
GNAS                  0.011   GNAS complex locus alex 
HEG1                  0.009   HEG homolog 1 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728307             0.009   PREDICTED: hypothetical protein 
ATXN2L                0.008   ataxin 2 related protein isoform B 
ATXN2L                0.008   ataxin 2 related protein isoform E 
ATXN2L                0.008   ataxin 2 related protein isoform C 
ATXN2L                0.008   ataxin 2 related protein isoform A 
ATXN2L                0.008   ataxin 2 related protein isoform D 
CPLX4                 0.008   complexin 4 
LOC100291220          0.007   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.007   PREDICTED: hypothetical protein XP_002343483 
LOC375295             0.007   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.007   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.007   PREDICTED: hypothetical protein 
GRIN3B                0.007   glutamate receptor, ionotropic, N-methyl-D-aspartate...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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