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Search of human proteins with 89041220
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89041220 PREDICTED: CMT1A duplicated region transcript
15-like 1 [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-li... 243 2e-65
gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-lik... 243 2e-65
gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-li... 239 5e-64
gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-lik... 239 5e-64
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 40 4e-04
gi|89886484 XK, Kell blood group complex subunit-related family,... 37 0.003
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.004
gi|57864582 hornerin [Homo sapiens] 34 0.022
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 34 0.029
gi|126090909 engrailed homeobox 1 [Homo sapiens] 34 0.029
gi|23957680 ral guanine nucleotide dissociation stimulator-like ... 34 0.029
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 33 0.038
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.064
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 33 0.064
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 33 0.064
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|239756524 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo ... 32 0.084
gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo ... 32 0.084
gi|109255251 loricrin [Homo sapiens] 32 0.084
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 32 0.084
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 32 0.11
gi|119395750 keratin 1 [Homo sapiens] 32 0.14
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 32 0.14
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b... 32 0.14
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.14
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 32 0.14
gi|153792074 proline rich 12 [Homo sapiens] 32 0.14
gi|148727255 microtubule associated serine/threonine kinase fami... 31 0.19
gi|46358366 zinc finger protein 746 [Homo sapiens] 31 0.19
>gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-like
1 [Homo sapiens]
Length = 110
Score = 243 bits (621), Expect = 2e-65
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-like 1
[Homo sapiens]
Length = 110
Score = 243 bits (621), Expect = 2e-65
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-like
2 [Homo sapiens]
Length = 110
Score = 239 bits (609), Expect = 5e-64
Identities = 107/110 (97%), Positives = 108/110 (98%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHT DPIGAAS HCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWS+RRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-like 2
[Homo sapiens]
Length = 110
Score = 239 bits (609), Expect = 5e-64
Identities = 107/110 (97%), Positives = 108/110 (98%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHT DPIGAAS HCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWS+RRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 40.0 bits (92), Expect = 4e-04
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTC 64
A P P P + PG P GP PG +ASV C PGG G GG
Sbjct: 297 ALPPPPPPA---RAFGPGPAETPAVGPG-PGPRAALSRSASVRCAGPGGGGG--GGAPGA 350
Query: 65 SWSIRRHSSTCGTGCR 80
W+ R + CG G R
Sbjct: 351 LWTEAREQALCGPGLR 366
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 50 CPGGDSGAHGGTDTCSWSIRR--HSSTCGTGCRA---KASMGRAPSRESAGGGGSSS-QG 103
C GG G+ G ++ S I ++S+C GCR+ ++ +GR P R +A GG Q
Sbjct: 39 CGGGGDGSEPG-ESSSMHICHCCNTSSCYWGCRSACLRSLLGRKPRRSAAADGGDQPLQP 97
Query: 104 PAQPGA 109
PA PGA
Sbjct: 98 PAAPGA 103
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 36.6 bits (83), Expect = 0.004
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
Query: 7 PSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSW 66
P + P L P G PGA PS P A S PGG + A + + +
Sbjct: 31 PRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSAS 90
Query: 67 SIRRHSSTCGTG-------------CRAKASMG------RAPSRESAGGGGS 99
S SS+ +G + A++G RA ES GGGGS
Sbjct: 91 SSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGS 142
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 34.3 bits (77), Expect = 0.022
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 20 HPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGA--------HGGTDTCSWSIRRH 71
H + GQ G+G W P G+ S G SG+ HG + S R+H
Sbjct: 671 HSSSYGQHGSGSGWSSSN-GPHGSVSGQSSGFGHKSGSGQSSGYSQHGSGSSHSSGYRKH 729
Query: 72 SSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G R++ +S G + S G G S G + G+
Sbjct: 730 GSRSGQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGS 770
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 56 GAHGGTDTCSWSIRRHSSTCGTGCRAKASMGR--APSRESA-------GGGGSSSQGPAQ 106
G HG S RH S G+G S GR + SR+S+ G G SSS+GP +
Sbjct: 518 GQHGSGSRQSLGHSRHGS--GSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYE 575
Query: 107 PGA 109
G+
Sbjct: 576 SGS 578
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 55 SGAHGGTDTCSWSIRRHSS----TCGTGCRAKASMGRAPS----RESAGGGGSSSQGPAQ 106
S HG + S S +H S + G G S G++PS R +G G SSS GP +
Sbjct: 970 SEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGS-GQSPSPSRGRHGSGSGQSSSYGPYR 1028
Query: 107 PGA 109
G+
Sbjct: 1029 SGS 1031
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 27/109 (24%)
Query: 20 HPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSW------------- 66
H + GQ G+G W ++S G S G ++ SW
Sbjct: 1371 HSSSYGQHGSGSGW--------SSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGSG 1422
Query: 67 ---SIRRHSSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S +H S G R + +S G + S G G S G Q G+
Sbjct: 1423 HSSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 1471
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 27/109 (24%)
Query: 20 HPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSW------------- 66
H + GQ G+G W ++S G S G ++ SW
Sbjct: 1841 HSSSYGQHGSGSGW--------SSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSG 1892
Query: 67 ---SIRRHSSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S +H S G R + +S G + S G G S G Q G+
Sbjct: 1893 HSSSYEQHGSRSGQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 1941
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 27/109 (24%)
Query: 20 HPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSW------------- 66
H + GQ G+G W ++S G S G ++ SW
Sbjct: 2311 HSSSYGQHGSGSGW--------SSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSG 2362
Query: 67 ---SIRRHSSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S +H S G R + +S G + S G G S G Q G+
Sbjct: 2363 HSSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 2411
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 58 HGGTDTCSWSIRRHSS----TCGTGCRAKASMGRAPS----RESAGGGGSSSQGPAQPGA 109
HG + S S +H S + G G S G++PS R +G G SSS GP G+
Sbjct: 1913 HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGS-GQSPSPSRGRHGSGSGQSSSYGPYGSGS 1971
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 47 HCPCPGGDSG--AHGGTDTCSWSIRRHSSTCGTGCRAK---ASMGRAPSRESAGGGGSSS 101
H G SG HG S S +H S G R++ +S G + S G G S
Sbjct: 934 HKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQHGSSSGSSSSYGQHGSGSRQS 993
Query: 102 QGPAQPGA 109
G Q G+
Sbjct: 994 LGHGQHGS 1001
Score = 25.8 bits (55), Expect = 7.8
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 20 HPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGT-- 77
H T GQ G+ S + GA+S G HG + S R S G
Sbjct: 2012 HSSTHGQHGSA-SGQSSSCGQHGASSGQ----SSSHGQHGSGSSQSSGYGRQGSGSGQSP 2066
Query: 78 --GCRAKASMGRAPS--RESAGGGGSSSQGPAQPG 108
G R S ++PS R +G G SSS G PG
Sbjct: 2067 GHGQRGSGSR-QSPSYGRHGSGSGRSSSSGQHGPG 2100
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 33.9 bits (76), Expect = 0.029
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 19 AHPGTTGQPGAGP--SWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCG 76
A PG GAGP GA V PC G +G GG +W++R + T G
Sbjct: 19 AEPGKGDSGGAGPLSGSARRGRGGGGAIRVRRPCWSGGAGRGGGP---AWAVRLPTVTAG 75
Query: 77 ---------TGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
+ RA S +P R G Q QPG A
Sbjct: 76 WTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKA 118
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 33.9 bits (76), Expect = 0.029
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 3 KKAHPSPQTPVALCKKAHPG-------TTGQPGAG--PSWPGHTIDPIGAASV------H 47
KK P PQ VA + G GQ AG P P T P GAAS+ +
Sbjct: 118 KKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAP-GAASLLCAPDAN 176
Query: 48 CPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
C P G A G S + ++ A+ A ++ S GGG S G P
Sbjct: 177 CGPPDGSQPAAAGAGA-SKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSP 235
Query: 108 GA 109
GA
Sbjct: 236 GA 237
>gi|23957680 ral guanine nucleotide dissociation stimulator-like 4
[Homo sapiens]
Length = 473
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 9 PQTPVALCKKAH----PGTTGQPGAGPSWPGHTIDPIGAASVHCPCPG 52
P++P AL + PG PG GP PG ++P A CPC G
Sbjct: 156 PESPAALGPPGYLHSAPGPAPAPGEGPP-PGTVLEPQSAPESSCPCRG 202
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 33.5 bits (75), Expect = 0.038
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 2 PKKAHPSPQ-TPVALCKKA---HPGTT-----GQPGAGPSWPGHTIDPIGAASVHCPCPG 52
P + P P TP K PG++ GQP G + P + P+ G
Sbjct: 348 PSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAPGQPSTGVARPTVSSGPVPRRQNGSSSSG 407
Query: 53 GD---SGAHGGTDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGS-----SSQGP 104
+ SG+ T+ + S R S TCG G A +S G P R +G S SS+GP
Sbjct: 408 PERSISGSKKPTNDSNPSRRTVSGTCGPGQPASSSGG--PGRPISGSVSSARPLGSSRGP 465
Query: 105 AQP 107
+P
Sbjct: 466 GRP 468
Score = 29.3 bits (64), Expect = 0.71
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTC 64
++PS +T C GQP + PG I + SV P G S G +
Sbjct: 422 SNPSRRTVSGTCGP------GQPASSSGGPGRPI----SGSVSSARPLGSSRGPGRPVSS 471
Query: 65 SWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
+RR S G R+ + GR+ S G S+ P +P
Sbjct: 472 PHELRRPVSGLGPPGRSVSGPGRSISGSIPAGRTVSNSVPGRP 514
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.7 bits (73), Expect = 0.064
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 2 PKKAHPS-PQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
P A P+ PQ P L K PG TG PG G + P +V P P G SG G
Sbjct: 2191 PGLAGPAGPQGPSGL--KGEPGETGPPGRGLTGP--------TGAVGLPGPPGPSGLVG- 2239
Query: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G + AP R+ A G P PG+
Sbjct: 2240 ---------PQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGS 2279
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 8 SPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTC 64
+PQTP A PGT G G GP G + I C SG H G TC
Sbjct: 51 TPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECV----VCGDKSSGKHYGQFTC 103
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.064
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGP---SWPGHTIDPIGAASVHCPCPGGDSGAHGGT 61
+HP + P LC HPG P A S AA+ + GG+
Sbjct: 326 SHPYSR-PELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGS 384
Query: 62 DTCSW-SIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPG 108
CS S S A A++G GGGG G A G
Sbjct: 385 APCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 0.084
Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTC 64
AH + + L P TG PG P PI A P PG +G G C
Sbjct: 79 AHKLYRHDLGLRSVGGPCDTGSPGPAPG----RCRPIAARLAARPAPGTAAGRGG----C 130
Query: 65 SWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGA 109
++ GT R R+P+ ES G G S GPA A
Sbjct: 131 CEALPAE----GTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAA 171
>gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 32.3 bits (72), Expect = 0.084
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S ++ R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
sapiens]
Length = 176
Score = 32.3 bits (72), Expect = 0.084
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S ++ R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo
sapiens]
Length = 176
Score = 32.3 bits (72), Expect = 0.084
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S ++ R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 0.084
Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 3 KKAHPSPQTPVALCKKAHPGTTG--QPGAGPSWPGHTIDPIGAASVHCP----------- 49
+K P+PQ PV K + G G G G + G G++ C
Sbjct: 4 QKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGG 63
Query: 50 CPGGDSGAHGGTD----------TCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGS 99
C GG SG GG + +S SS G+GC + S G S+GGGGS
Sbjct: 64 CGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFS--SGGGGSGCFSSGGGGS 121
Query: 100 SSQG 103
S G
Sbjct: 122 SGGG 125
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 31 PSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKASMGRAPS 90
PS+ G + G+ C GG G+ G C SS G+GC
Sbjct: 223 PSYGGGSSGGGGSGGSGCFSSGGGGGSSG----CGGG----SSGIGSGCIISGGGSVCGG 274
Query: 91 RESAGGGGSSSQGPAQPG 108
S GGGG SS G + G
Sbjct: 275 GSSGGGGGGSSVGGSGSG 292
Score = 29.3 bits (64), Expect = 0.71
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 28 GAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS--- 84
G G S G G C GG G+ GG C S SS G+GC +
Sbjct: 93 GGGSSGGGSGCFSSGGGGSGCFSSGG-GGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGF 151
Query: 85 MGRAPSRESAGG---GGSSSQG 103
G+A +S GG GGSS G
Sbjct: 152 SGQAVQCQSYGGVSSGGSSGGG 173
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor
[Homo sapiens]
Length = 1584
Score = 32.3 bits (72), Expect = 0.084
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 30/125 (24%)
Query: 3 KKAHPSP--QTPVALCKKAHPGTTGQPGAGPSWPGHTI---DPIGAASVHCPCP----GG 53
+ +HP QTP A G G P AGP P + D + +C G
Sbjct: 201 RSSHPCGIMQTPCACLG----GEAGGPAAGPLAPRGDVCLRDAVAGGPENCLTSLTQDRG 256
Query: 54 DSGAHGG----------TDTCSWSIRRHSSTC-------GTGCRAKASMGRAPSRESAGG 96
GA GG T C ++ + TC G GC GR +RE+ G
Sbjct: 257 GHGATGGWKLWSLWGECTRDCGGGLQTRTRTCLPAPGVEGGGCEGVLEEGRQCNREACGP 316
Query: 97 GGSSS 101
G +S
Sbjct: 317 AGRTS 321
Score = 29.6 bits (65), Expect = 0.54
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 7 PSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAA-SVHCPCPGGDSG--------- 56
P+PQT ++ P + G W T + ++ S C P +
Sbjct: 348 PAPQTGDPAAEEWSPWSVCSSTCGEGWQTRTRFCVSSSYSTQCSGPLREQRLCNNSAVCP 407
Query: 57 AHGGTDTCS-WSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGP 104
HG D S WS+ SSTCG G R + R P GG+ +GP
Sbjct: 408 VHGAWDEWSPWSLC--SSTCGRGFRDRTRTCRPPQ-----FGGNPCEGP 449
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 32.0 bits (71), Expect = 0.11
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 48 CPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGC 79
C CPG + H T TCS + H +C C
Sbjct: 1175 CQCPGENPACHPATGTCSCAAGYHGPSCQQRC 1206
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 52 GGDSGAHG--GTDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGA 109
GG G HG G+ + S R S G G G S S GG GSSS G G
Sbjct: 569 GGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGG 628
Query: 110 A 110
+
Sbjct: 629 S 629
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 24 TGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWS---IRRHSSTCGTGCR 80
+G P + G + AA P SGA GGT +RRH + + R
Sbjct: 828 SGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGR 887
Query: 81 AKASMGRA------PSRESAG-GGGSSSQGPAQPGA 109
K + R P SAG GG SQ P+Q A
Sbjct: 888 DKGKLSRLKPAPPPPPAASAGKAGGKPSQSPSQEAA 923
>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
[Homo sapiens]
Length = 1149
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 24 TGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWS---IRRHSSTCGTGCR 80
+G P + G + AA P SGA GGT +RRH + + R
Sbjct: 847 SGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGR 906
Query: 81 AKASMGRA------PSRESAG-GGGSSSQGPAQPGA 109
K + R P SAG GG SQ P+Q A
Sbjct: 907 DKGKLSRLKPAPPPPPAASAGKAGGKPSQSPSQEAA 942
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 7 PSPQTPVALCKKAHPGTTGQPG-AGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCS 65
P +P +A P TG P A P+ T P G+ S P + + G+ + +
Sbjct: 434 PPRASPTGTPPRASP--TGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRA 491
Query: 66 WSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
R S T + AS+ R PSR S S++ P A
Sbjct: 492 SLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTA 536
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 2 PKKAHPS---PQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAH 58
P +A P+ +T + T P A P+ P G S P + +
Sbjct: 407 PPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASP 466
Query: 59 GGTDTCSWSIRRHSSTCGTGCRAKASMGRAPSRES 93
G+ + + S+ TG ++AS+ R PSR S
Sbjct: 467 TGSPSTASPTGSPSTASPTGSPSRASLTRTPSRAS 501
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 9 PQTPVALCKKAHPGTTGQPG--AGPSWPGHTIDPIGAASVHCPCPGGDSGAHG 59
PQ P L PGT G+PG P PG + G++ + P P G GA G
Sbjct: 783 PQGPQGL-----PGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMG 830
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 31.6 bits (70), Expect = 0.14
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGT 61
P KA PS T A + P G GAG G+ PI + + GG A GG
Sbjct: 346 PSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYR--PIIQSPGYKTGKGGYGAAAGGA 403
Query: 62 DTCSWSIRRHSSTCGT--GCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
+ C + G A + G+A AGG G + P QP
Sbjct: 404 TRPPPPRSTATPKCQSLGGPAAAYATGKA---SGAGGAGGQAYSPGQP 448
Score = 27.7 bits (60), Expect = 2.1
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 23/104 (22%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWP--GHTIDPIGAASVHCPCPGGDSGAHG 59
P A P P P A + + G S+P GH A++ C GG + G
Sbjct: 295 PASAQPPPPPPPAHALQHYLS------CGGSYPSMGHR------ANLACSPLGGGEPSPG 342
Query: 60 GTDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQG 103
+ S +G A AS GRA E+AGGGG+ G
Sbjct: 343 AGEP--------SKAGPSGATAGAS-GRATGPEAAGGGGAGGGG 377
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 23 TTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAK 82
+T +P + P P + +S H P PG D G T S+ + G
Sbjct: 1979 STAEPSSSPQDPPKPVAAHSESSSHKPRPGPDPGP-PKTKHPDRSLSSQKPSVG------ 2031
Query: 83 ASMGRAPSRESAGGGGSSSQGPAQPG 108
A+ G+ P+ +S GG +G ++ G
Sbjct: 2032 ATKGKEPATQSLGGSSREGKGHSKSG 2057
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 16 CKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTC 75
CK +PG T G P H P G C G + S+ H +C
Sbjct: 425 CK--YPGRTKGFGHKPGLKKHPAAPPGGRPFTC-------ATCGKSFQLQVSLSAHQRSC 475
Query: 76 GTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
G + G S S GGGG S G A+ G+A
Sbjct: 476 GAPDGSGPGTGGGGSG-SGGGGGGSGGGSARDGSA 509
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,702,153
Number of Sequences: 37866
Number of extensions: 392123
Number of successful extensions: 2192
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 453
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.