Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CDRT15L2 Sequence: fasta or formatted (110aa) NCBI GI: 89041269
Description:

PREDICTED: CMT1A duplicated region transcript 15-like 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {110aa} PREDICTED: CMT1A duplicated region transcript 15-like 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         15           2
 C cysteine            5.5          6           1
 D aspartate           2.7          3           1
 E glutamate           0.9          1           1
 F phenylalanine       0.0          0           0
 G glycine            18.2         20           4
 H histidine           5.5          6           1
 I isoleucine          0.9          1           1
 K lysine              4.5          5           2
 L leucine             0.9          1           1
 M methionine          1.8          2           1
 N asparagine          0.0          0           0
 P proline            12.7         14           1
 Q glutamine           3.6          4           1
 R arginine            5.5          6           2
 S serine             12.7         14           3
 T threonine           7.3          8           2
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: CMT1A duplicated region transcript 15-lik... 
CDRT15L2              1.000   PREDICTED: CMT1A duplicated region transcript 15-li...
CDRT15L1              0.977   PREDICTED: CMT1A duplicated region transcript 15-li...
CDRT15L1              0.977   PREDICTED: CMT1A duplicated region transcript 15-lik...
GRASP                 0.064   GRP1 (general receptor for phosphoinositides 1)-asso...
EN1                   0.059   engrailed homeobox 1 
MLL                   0.059   myeloid/lymphoid or mixed-lineage leukemia protein [...
XKR6                  0.055   XK, Kell blood group complex subunit-related family,...
HRNR                  0.050   hornerin 
FLJ36644              0.046   PREDICTED: hypothetical protein 
LOR                   0.046   loricrin 
NR2F1                 0.041   nuclear receptor subfamily 2, group F, member 1 [Homo...
EVX2                  0.041   even-skipped homeobox 2 
UNCX                  0.041   UNC homeobox 
SPTY2D1               0.041   SPT2, Suppressor of Ty, domain containing 1 
GSK3A                 0.041   glycogen synthase kinase 3 alpha 
RGL4                  0.037   ral guanine nucleotide dissociation stimulator-like ...
LOC100293943          0.037   PREDICTED: hypothetical protein 
LOC100290754          0.037   PREDICTED: hypothetical protein XP_002347676 
LOC100288847          0.037   PREDICTED: hypothetical protein XP_002343470 
BAI1                  0.037   brain-specific angiogenesis inhibitor 1 precursor [...
MEGF6                 0.037   EGF-like-domain, multiple 3 
PRR12                 0.037   proline rich 12 
KRT1                  0.032   keratin 1 
LOC100133756          0.032   PREDICTED: hypothetical protein, partial 
LOC645249             0.032   PREDICTED: hypothetical protein 
LOC645249             0.032   PREDICTED: hypothetical protein 
LOC645249             0.032   PREDICTED: hypothetical protein 
KCNC3                 0.032   Shaw-related voltage-gated potassium channel protein...
COL4A4                0.032   alpha 4 type IV collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press