Guide to the Human Genome
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Name: LOC100288847 Sequence: fasta or formatted (176aa) NCBI GI: 239745462
Description:

PREDICTED: hypothetical protein XP_002343470

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         18           2
 C cysteine            3.4          6           1
 D aspartate           2.8          5           2
 E glutamate           4.0          7           1
 F phenylalanine       2.3          4           1
 G glycine            14.8         26           2
 H histidine           4.5          8           1
 I isoleucine          2.8          5           1
 K lysine              4.0          7           1
 L leucine             9.7         17           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             8.5         15           2
 Q glutamine           6.8         12           2
 R arginine            6.2         11           2
 S serine              8.5         15           3
 T threonine           4.0          7           1
 V valine              3.4          6           1
 W tryptophan          3.4          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343470 
LOC100293943          1.000   PREDICTED: hypothetical protein 
LOC100290754          1.000   PREDICTED: hypothetical protein XP_002347676 
CDRT15L2              0.023   PREDICTED: CMT1A duplicated region transcript 15-li...
CDRT15L2              0.023   PREDICTED: CMT1A duplicated region transcript 15-lik...
COL6A6                0.020   collagen type VI alpha 6 
CDRT15L1              0.020   PREDICTED: CMT1A duplicated region transcript 15-li...
CDRT15L1              0.020   PREDICTED: CMT1A duplicated region transcript 15-lik...
LOC100289074          0.020   PREDICTED: hypothetical protein XP_002343632 
DGKI                  0.017   diacylglycerol kinase, iota 
LOC100128979          0.014   PREDICTED: hypothetical protein 
LOC100128979          0.014   PREDICTED: hypothetical protein 
LOC100128979          0.014   PREDICTED: hypothetical protein 
MEFV                  0.014   Mediterranean fever protein 
LOC100292390          0.014   PREDICTED: hypothetical protein 
LOC100290783          0.014   PREDICTED: hypothetical protein XP_002347614 
LOC100291400          0.014   PREDICTED: hypothetical protein XP_002348330 
LOC100287030          0.014   PREDICTED: hypothetical protein XP_002343628 
LOC100288864          0.014   PREDICTED: hypothetical protein XP_002343435 
LOC100288057          0.014   PREDICTED: hypothetical protein XP_002342282 
SSPO                  0.014   SCO-spondin 
LOC100289661          0.011   PREDICTED: hypothetical protein 
LOC100289661          0.011   PREDICTED: hypothetical protein XP_002343723 
GPN1                  0.011   GPN-loop GTPase 1 isoform a 
WNK2                  0.011   WNK lysine deficient protein kinase 2 
IMP5                  0.011   intramembrane protease 5 
LOC100290261          0.009   PREDICTED: hypothetical protein XP_002347648 
ZNF319                0.009   zinc finger protein 319 
TNFSF11               0.009   tumor necrosis factor ligand superfamily, member 11 i...
NOTCH4                0.009   notch4 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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