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Search of human proteins with 88980290
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]
(54 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166958 PREDICTED: hypothetical protein [Homo sapiens] 113 3e-26
gi|88980290 PREDICTED: hypothetical protein [Homo sapiens] 113 3e-26
gi|88974375 PREDICTED: hypothetical protein [Homo sapiens] 113 3e-26
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 33 0.048
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 32 0.11
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 32 0.11
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 31 0.18
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|120587019 zinc finger protein 318 [Homo sapiens] 31 0.24
gi|11321565 matrilin 3 precursor [Homo sapiens] 30 0.31
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 30 0.31
gi|239756649 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|14249622 ajuba isoform 1 [Homo sapiens] 30 0.41
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 30 0.41
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.53
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.53
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 30 0.53
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 30 0.53
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.69
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 29 0.69
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 29 0.69
>gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]
Length = 54
Score = 113 bits (283), Expect = 3e-26
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
>gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]
Length = 54
Score = 113 bits (283), Expect = 3e-26
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
>gi|88974375 PREDICTED: hypothetical protein [Homo sapiens]
Length = 54
Score = 113 bits (283), Expect = 3e-26
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR
Sbjct: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
P + R A APR PR G R G +PG +H LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
P + R A APR PR G R G +PG +H LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.1 bits (74), Expect = 0.048
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRLRG 48
P + R A APR PR G R G +PG +H LRG
Sbjct: 154 PQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRG 200
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGA-REPGTISHIRLRGS 49
G+ P R AAA + PG G+GG RRGA +P T S R S
Sbjct: 103 GEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSS 150
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)
Query: 5 APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
A G A ++PR P RP R GS G RRRG+R+P G ++ R RG
Sbjct: 52 AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)
Query: 5 APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
A G A ++PR P RP R GS G RRRG+R+P G ++ R RG
Sbjct: 52 AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 16/60 (26%)
Query: 5 APGRAAAAAAPRRSPGRPRR--------------GSGGPPRRRGAREP--GTISHIRLRG 48
A G A ++PR P RP R GS G RRRG+R+P G ++ R RG
Sbjct: 52 AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 4 QAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
+A GRA A A PR P P GG P R+ A PG
Sbjct: 1401 EAEGRAGARAGPRPGPRPP----GGAPARKAAVAPG 1432
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
G+A G A +A RR P R RG+ G RR G R G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
G+A G A +A RR P R RG+ G RR G R G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPG 39
G+A G A +A RR P R RG+ G RR G R G
Sbjct: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 2 PGQAPGRAAAAAAPRR-----SPGRPRRGSGGPPRRRGAREPG 39
P GR A+ + PR SP R RRGS PPR R PG
Sbjct: 60 PSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPG 102
>gi|11321565 matrilin 3 precursor [Homo sapiens]
Length = 486
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGA 35
PG +PGR + AAP G P G+ P R RGA
Sbjct: 44 PGGSPGRRPSPAAP---DGAPASGTSEPGRARGA 74
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 7 GRAAAAAAPRRSPGRPRR---GSGGPPRRRGAREP 38
GRAA A RR R RR S PRRRG R P
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRP 411
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 6 PGRAAAAAAPRRSP---GRPRRGSGGPPRRRGAREPGTISHIRLRGSRILPR 54
P R + +PR +P GR R +GG RRR R R R S PR
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRR----RRRRSRSSASAPR 404
>gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRG---SGGPPRRRGA 35
G+AP + A AAP PGR RRG +G PR GA
Sbjct: 260 GKAPAQGAFPAAP---PGRGRRGPARTGAEPRAEGA 292
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIR-LRGSRILPR 54
PG GR + PR+S R G G ARE G++ R RGS PR
Sbjct: 31 PGPGKGRLSGLGGPRKSGPRGATGGPGDEPLEPAREQGSLDAERNQRGSFEAPR 84
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGP--PRRRGAR--EPGTISHI 44
G APG AA A+P G G GG P RRG R + G++ ++
Sbjct: 150 GSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENV 195
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
G AP R AA PR G +RG G R RGAR G R RG R
Sbjct: 470 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGVR 516
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
G AP R AA PR G +RG G R RGAR G R RG R
Sbjct: 505 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGVR 551
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHI 44
PG G A A P +PGR PP RR RE GT + +
Sbjct: 104 PGSPAGPAPTRARPLGAPGR-----SAPPARRRERELGTDARV 141
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
+P P R + P+R PGRP R G RR PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
+P P R + P+R PGRP R G RR PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHI 44
PG G A A P +PGR PP RR RE GT + +
Sbjct: 104 PGSPAGPAPTRARPLGAPGR-----SAPPARRRERELGTDARV 141
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTIS 42
+P P R + P+R PGRP R G RR PGT S
Sbjct: 55 LPPPRPARPSHLLWPKRLPGRPGRAPG--DRRAALPPPGTRS 94
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 29.3 bits (64), Expect = 0.69
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 3 GQAPGRAAAAAAPRRSPGRPRRGSGGPPRR-RGAREPGTISHIRLRGSR 50
G AP R AA PR G +RG G R RGAR G R RG +
Sbjct: 505 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR--GGAQQQRGRGGK 551
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 2 PGQAPGRAAAAAAPRRSPGRPRRGSGGPPRRRGAREPGTISHIRL 46
P +P AAA AA R +G P RGA EPG H RL
Sbjct: 30 PPPSPSAAAAGAAGARGSE-----TGDPGSPRGAEEPGKKRHERL 69
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MPGQAPGRAAAAAAPRRSPG---RPRRGSGGPPRRRGAR--EPG 39
+PG+ G AA P R P RP R + P RR AR EPG
Sbjct: 86 LPGRGRGAPGCAALPSRLPSPRPRPSRRAPPPVSRRTARGWEPG 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,348,411
Number of Sequences: 37866
Number of extensions: 184857
Number of successful extensions: 2859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 2510
Number of HSP's gapped (non-prelim): 484
length of query: 54
length of database: 18,247,518
effective HSP length: 28
effective length of query: 26
effective length of database: 17,187,270
effective search space: 446869020
effective search space used: 446869020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.