Guide to the Human Genome
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Name: LRFN4 Sequence: fasta or formatted (635aa) NCBI GI: 27363458
Description:

leucine rich repeat and fibronectin type III domain containing 4

Referenced in:

Fibronectin Family
Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         72           3
 C cysteine            2.5         16           1
 D aspartate           4.6         29           2
 E glutamate           4.3         27           2
 F phenylalanine       2.5         16           1
 G glycine            10.7         68           2
 H histidine           3.0         19           2
 I isoleucine          2.2         14           1
 K lysine              0.5          3           1
 L leucine            15.3         97           6
 M methionine          0.8          5           1
 N asparagine          3.5         22           2
 P proline             8.3         53           3
 Q glutamine           2.5         16           1
 R arginine            7.6         48           2
 S serine              7.2         46           2
 T threonine           5.0         32           1
 V valine              5.7         36           2
 W tryptophan          1.3          8           1
 Y tyrosine            1.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat and fibronectin type III domain ... 
LRFN2                 0.475   leucine rich repeat and fibronectin type III domain ...
LRFN3                 0.449   leucine rich repeat and fibronectin type III domain ...
LRFN5                 0.433   leucine rich repeat and fibronectin type III domain ...
LRFN1                 0.423   leucine rich repeat and fibronectin type III domain...
LRRC4B                0.108   leucine rich repeat containing 4B 
LINGO4                0.097   leucine rich repeat and Ig domain containing 4 [Homo...
LRRC4C                0.090   netrin-G1 ligand 
LINGO3                0.086   leucine rich repeat and Ig domain containing 3 [Hom...
LRRC4                 0.083   leucine rich repeat containing 4 
PXDNL                 0.083   peroxidasin homolog-like 
VASN                  0.082   slit-like 2 
PXDN                  0.081   peroxidasin 
LRRN2                 0.080   leucine rich repeat neuronal 2 
LRRN2                 0.080   leucine rich repeat neuronal 2 
LRRC24                0.078   leucine rich repeat containing 24 
LINGO2                0.077   leucine rich repeat and Ig domain containing 2 [Homo...
ISLR2                 0.077   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.077   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.077   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.077   immunoglobulin superfamily containing leucine-rich ...
LRIT3                 0.070   leucine-rich repeat, immunoglobulin-like and transm...
ISLR                  0.070   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.070   immunoglobulin superfamily containing leucine-rich re...
LRIT2                 0.070   leucine rich repeat containing 22 
LRRN3                 0.069   leucine rich repeat neuronal 3 
LRRN3                 0.069   leucine rich repeat neuronal 3 
LRRN3                 0.069   leucine rich repeat neuronal 3 
LINGO1                0.065   leucine-rich repeat neuronal 6A 
LRRN1                 0.063   leucine rich repeat neuronal 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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