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Search of human proteins with 87241872
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|87241872 ring finger protein 151 [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|87241872 ring finger protein 151 [Homo sapiens] 521 e-148
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 103 1e-22
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 86 3e-17
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 86 3e-17
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 75 7e-14
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 75 7e-14
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 75 7e-14
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 71 1e-12
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 71 1e-12
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 71 1e-12
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 69 3e-12
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 69 4e-12
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 66 3e-11
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 66 3e-11
gi|109134327 PTD016 protein [Homo sapiens] 58 7e-09
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 55 7e-08
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 54 9e-08
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 52 4e-07
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 52 4e-07
gi|37595555 ring finger protein 125 [Homo sapiens] 52 5e-07
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 51 8e-07
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 50 1e-06
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 50 1e-06
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 50 1e-06
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 50 1e-06
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 50 1e-06
gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens] 50 2e-06
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 49 4e-06
gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens] 49 4e-06
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 49 4e-06
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 521 bits (1342), Expect = e-148
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MGGGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKE 60
MGGGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKE
Sbjct: 1 MGGGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKE 60
Query: 61 VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTS 120
VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTS
Sbjct: 61 VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTS 120
Query: 121 QVPRGTLAEHRQHCQQGSQQRCPLGCGATLDPAERARHNCYRELHNAWSVRQERRRPLLL 180
QVPRGTLAEHRQHCQQGSQQRCPLGCGATLDPAERARHNCYRELHNAWSVRQERRRPLLL
Sbjct: 121 QVPRGTLAEHRQHCQQGSQQRCPLGCGATLDPAERARHNCYRELHNAWSVRQERRRPLLL 180
Query: 181 SLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGAPQEEAEAAPEGNVGAEVVGEPRA 240
SLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGAPQEEAEAAPEGNVGAEVVGEPRA
Sbjct: 181 SLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGAPQEEAEAAPEGNVGAEVVGEPRA 240
Query: 241 NIPCK 245
NIPCK
Sbjct: 241 NIPCK 245
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 103 bits (258), Expect = 1e-22
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPC-CRKEVK 62
G++L+ F D + C++CH VL+ P PC H+FC C+L W+ ++ +CP CR +
Sbjct: 2 GFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLS 61
Query: 63 RKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQV 122
K++ H+ L++ I +L++KC A GC L H + C F C + GC +
Sbjct: 62 AKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQVL 121
Query: 123 PRGTLAEH-RQHCQQGSQQRCPLGCGATLDPAER--ARHNCYREL--HN 166
R + H R C RC GCG L E+ H C R L HN
Sbjct: 122 LRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHN 170
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 85.9 bits (211), Expect = 3e-17
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLP-CSHIFCKKCILRWLARQKTCPCCRKEVK 62
GYD+ F D + +C +C GVL+ P + P C H FC CI +W ++Q+TCP R V
Sbjct: 2 GYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV- 60
Query: 63 RKKVVHMNK----LRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC---PFELTACPN 115
V H+ +R + +L++ C NA GC L + H C P C
Sbjct: 61 --TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-E 117
Query: 116 EGCTSQVPRGTLAEHR--QHCQQGSQQR 141
+GC ++P+ L H +H + QQ+
Sbjct: 118 QGCGLEMPKDELPNHNCIKHLRSVVQQQ 145
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 85.9 bits (211), Expect = 3e-17
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLP-CSHIFCKKCILRWLARQKTCPCCRKEVK 62
GYD+ F D + +C +C GVL+ P + P C H FC CI +W ++Q+TCP R V
Sbjct: 2 GYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV- 60
Query: 63 RKKVVHMNK----LRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC---PFELTACPN 115
V H+ +R + +L++ C NA GC L + H C P C
Sbjct: 61 --TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-E 117
Query: 116 EGCTSQVPRGTLAEHR--QHCQQGSQQR 141
+GC ++P+ L H +H + QQ+
Sbjct: 118 QGCGLEMPKDELPNHNCIKHLRSVVQQQ 145
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 10 FASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCI--LRWLARQKTCPCCRKEVKRKKVV 67
F + + C+ CH VL P + C H FC+ CI LR L CP ++ +K ++V
Sbjct: 35 FVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVF 94
Query: 68 HMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQVPRGTL 127
N ++ + L V C NA GC L + H C F+ C NE C V R L
Sbjct: 95 KDNCCKREVLNLYVYCSNA-PGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDL 153
Query: 128 AEHRQHCQQGSQQRC 142
EH Q +++C
Sbjct: 154 KEHLSASCQFRKEKC 168
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 10 FASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCI--LRWLARQKTCPCCRKEVKRKKVV 67
F + + C+ CH VL P + C H FC+ CI LR L CP ++ +K ++V
Sbjct: 35 FVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVF 94
Query: 68 HMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQVPRGTL 127
N ++ + L V C NA GC L + H C F+ C NE C V R L
Sbjct: 95 KDNCCKREVLNLYVYCSNA-PGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDL 153
Query: 128 AEHRQHCQQGSQQRC 142
EH Q +++C
Sbjct: 154 KEHLSASCQFRKEKC 168
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 10 FASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCI--LRWLARQKTCPCCRKEVKRKKVV 67
F + + C+ CH VL P + C H FC+ CI LR L CP ++ +K ++V
Sbjct: 35 FVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVF 94
Query: 68 HMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQVPRGTL 127
N ++ + L V C NA GC L + H C F+ C NE C V R L
Sbjct: 95 KDNCCKREVLNLYVYCSNA-PGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDL 153
Query: 128 AEHRQHCQQGSQQRC 142
EH Q +++C
Sbjct: 154 KEHLSASCQFRKEKC 168
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 70.9 bits (172), Expect = 1e-12
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 3 GGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQK-TCPCCRKEV 61
GGY F + + C CH VL P + C H FC+ C+ L+ C C++ +
Sbjct: 37 GGYK-EKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 95
Query: 62 KRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGH-QDSCPFELTACPNEGCTS 120
+ KV N ++ I L++ C+N GC L H H ++ C FE C C
Sbjct: 96 VKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKE 155
Query: 121 QVPRGTLAEHRQHCQQGSQQRC 142
+V R L +H + + + C
Sbjct: 156 KVLRKDLRDHVEKACKYREATC 177
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 70.9 bits (172), Expect = 1e-12
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 3 GGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQK-TCPCCRKEV 61
GGY F + + C CH VL P + C H FC+ C+ L+ C C++ +
Sbjct: 37 GGYK-EKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 95
Query: 62 KRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGH-QDSCPFELTACPNEGCTS 120
+ KV N ++ I L++ C+N GC L H H ++ C FE C C
Sbjct: 96 VKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKE 155
Query: 121 QVPRGTLAEHRQHCQQGSQQRC 142
+V R L +H + + + C
Sbjct: 156 KVLRKDLRDHVEKACKYREATC 177
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 70.9 bits (172), Expect = 1e-12
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 3 GGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQK-TCPCCRKEV 61
GGY F + + C CH VL P + C H FC+ C+ L+ C C++ +
Sbjct: 37 GGYK-EKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 95
Query: 62 KRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGH-QDSCPFELTACPNEGCTS 120
+ KV N ++ I L++ C+N GC L H H ++ C FE C C
Sbjct: 96 VKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKE 155
Query: 121 QVPRGTLAEHRQHCQQGSQQRC 142
+V R L +H + + + C
Sbjct: 156 KVLRKDLRDHVEKACKYREATC 177
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 69.3 bits (168), Expect = 3e-12
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 28/225 (12%)
Query: 9 LFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVH 68
+FA P C +C V K P C H FC++C L + + CP VK VV+
Sbjct: 120 VFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL----KSEKCPV--DNVKLTVVVN 173
Query: 69 MNKLRKTIGRLEVKCKNA---------------DAGCIVTCPLAHRKGHQDSCPFELTAC 113
+ + IG L + C++ GC T L+ RK H+ SC + C
Sbjct: 174 NIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVDPRGCPFTIKLSARKDHEGSCDYRPVRC 233
Query: 114 PNEGCTSQVPRGTLAEHRQHCQQGSQQRCPLGCG--ATLDPAERARHNC-YRELHNAWSV 170
PN + R L H + C+ GC D E C + L
Sbjct: 234 PNNPSCPPLLRMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQ 293
Query: 171 RQERRRPLLLSLLRRVRWLDQATSVVRRELAELSNFLEEDTALLE 215
+R + ++L ++ DQ + +R L +LS +++ LE
Sbjct: 294 TDDRFHEMHVALAQK----DQEIAFLRSMLGKLSEKIDQLEKSLE 334
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 68.9 bits (167), Expect = 4e-12
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLP-CSHIFCKKCILRWLARQK-TCPCCRKEV 61
G+D F P +C +C ++ P ++ C H FC C+ +L+ CP + +
Sbjct: 3 GFDYK-FLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPL 61
Query: 62 KRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQ 121
K+ +L + L ++C +++ GC + PL H +GH ++C F + CPN C +
Sbjct: 62 DYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNR-CPMK 120
Query: 122 VPRGTLAEHRQHCQQGSQQRCPL-GCGATLDPAERARHNCYRE---LHNAWSVRQERR 175
+ R L H QH + +C GC + + E C +E N R RR
Sbjct: 121 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRR 178
Score = 33.9 bits (76), Expect = 0.13
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 22/135 (16%)
Query: 100 KGHQDSCPFELTACPNEGCTSQVPRGTLAEHRQHCQQGSQQRCPL---GCGATLDPAERA 156
+ HQ CP ACPN+ V R L H + + CP GC A
Sbjct: 208 QSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMA 267
Query: 157 RHNCYRELHNAWSVRQERRRPLLLSLLRRVRWLDQATSVVRRELAELSNFLEEDTALL-- 214
RH +E +P L + V Q +RREL ELS + D L+
Sbjct: 268 RH------------VEESVKPHLAMMCALVSRQRQELQELRRELEELS--VGSDGVLIWK 313
Query: 215 ---EGAPQEEAEAAP 226
G +EA+A P
Sbjct: 314 IGSYGRRLQEAKAKP 328
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLA-RQKTCPCCRKEVK 62
GYD+ F P +S + C +C L+ + PC H FCK CI++ + CP + +
Sbjct: 55 GYDVE-FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 113
Query: 63 RKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACP 114
++ N ++ I L VKC N GC+ L H + HQ C F L CP
Sbjct: 114 ENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCP 163
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLA-RQKTCPCCRKEVK 62
GYD+ F P +S + C +C L+ + PC H FCK CI++ + CP + +
Sbjct: 55 GYDVE-FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 113
Query: 63 RKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACP 114
++ N ++ I L VKC N GC+ L H + HQ C F L CP
Sbjct: 114 ENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCP 163
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 58.2 bits (139), Expect = 7e-09
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 15 DSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNK 71
D + +CS+C ++P L C HIFC++C+ W R+KTCP CR + H+NK
Sbjct: 370 DVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISD----HINK 422
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 54.7 bits (130), Expect = 7e-08
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 19 VCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCR 58
+C++C + P L C H+FC++C+ WL R++TCP CR
Sbjct: 383 ICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCR 422
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 54.3 bits (129), Expect = 9e-08
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLAR-QKTCPCCRKE-- 60
G+ L + ++ ++CS C VL+RP + C H +C C+ L+ + C C E
Sbjct: 18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77
Query: 61 -------VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPL-AHRKGHQDSCPFELTA 112
++ N R+ + L C + GC L + H+ CP LT
Sbjct: 78 YEEGISILESSSAFPDNAARREVESLPAVCPS--DGCTWKGTLKEYESCHEGRCPLMLTE 135
Query: 113 CPNEGCTSQVPRGTLAEHRQH-CQQGSQQ----RCPLGCGA 148
CP C V G H +H C + S R P CGA
Sbjct: 136 CP--ACKGLVRLGEKERHLEHECPERSLSCRHCRAPC-CGA 173
Score = 28.1 bits (61), Expect = 7.3
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 25/105 (23%)
Query: 20 CSVCHGVLKR-----------PAR-LPCSHIFCKKCILRWLARQKTCP--------CCRK 59
C C G+++ P R L C H C A + CP C +K
Sbjct: 136 CPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKK 195
Query: 60 EVKRKKVV-HMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQ 103
++ R+K H+ KT G+ V C+ GC+ T ++ H+
Sbjct: 196 KIPREKFQDHV----KTCGKCRVPCRFHAIGCLETVEGEKQQEHE 236
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 52.4 bits (124), Expect = 4e-07
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 17 NFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
N +C++C + P PC H+FC +CI W + + CP CR++ +K++++ R
Sbjct: 290 NPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 52.4 bits (124), Expect = 4e-07
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 17 NFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
N +C++C + P PC H+FC +CI W + + CP CR++ +K++++ R
Sbjct: 270 NPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 326
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 52.0 bits (123), Expect = 5e-07
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 14 PDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQK-TCPCCRKEVKRKKVVHMNKL 72
P ++F C+VC VL +P R C H+FC+ CI L K TCP CR + + V +
Sbjct: 31 PVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
Query: 73 RKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC 106
+ R++ + KN A C L+ + H +C
Sbjct: 91 K----RMKSEYKNC-AECDTLVCLSEMRAHIRTC 119
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 51.2 bits (121), Expect = 8e-07
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 6 DLNLFASPPDSNFVCSVCHGVLKRPAR-LPCSHIFCKKCILRWLARQKT-CPCCRKEVKR 63
DL+ S + +F C VC VLK P R C H+FC+KC L + CP CR V R
Sbjct: 4 DLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTR 63
Query: 64 KK 65
++
Sbjct: 64 RE 65
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 19 VCSVCHGVLKRPA-RLPCSHIFCKKCILRWLARQKTCPCCRKEVKR 63
VC +C + A RLPC+HIF C+ W RQ+TCP CR +V R
Sbjct: 290 VCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLR 335
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 19 VCSVCHGVLKRPA-RLPCSHIFCKKCILRWLARQKTCPCCRKEVKR 63
VC +C + A RLPC+HIF C+ W RQ+TCP CR +V R
Sbjct: 290 VCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLR 335
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 15 DSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRK--KVVHMNKL 72
++ C +C L C+H FC CI W+ R+ CP CRK++K K +V N +
Sbjct: 398 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 457
Query: 73 RKTIGRLEVKCK 84
K + L + K
Sbjct: 458 NKMVNNLSSEVK 469
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/43 (53%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 20 CSVCHGVLKRPARLPCSHIFCKKCILRW---LARQKTCPCCRK 59
CSVC LK P + C H FCK CI RW L R CP CRK
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/43 (53%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 20 CSVCHGVLKRPARLPCSHIFCKKCILRW---LARQKTCPCCRK 59
CSVC LK P + C H FCK CI RW L R CP CRK
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
>gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens]
Length = 728
Score = 49.7 bits (117), Expect = 2e-06
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 36/153 (23%)
Query: 8 NLFASPP---DSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVK-- 62
N F S P D + +C +C L P PC H +C C+ +L + CP RK +
Sbjct: 26 NHFYSYPEEVDDDLICHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPMDRKPLVLQ 85
Query: 63 --RKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNE---- 116
+K + +NKL + +VTCP ++ C L C E
Sbjct: 86 HCKKSSILVNKLLNKL--------------LVTCPF------REHCTQVLQRCDLEHHFQ 125
Query: 117 -GCTSQVPRGTLAEHRQHCQQGSQQRCPLGCGA 148
C G + ++ Q G CP GC +
Sbjct: 126 TSCKGASHYGLTKDRKRRSQDG----CPDGCAS 154
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 48.9 bits (115), Expect = 4e-06
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 16 SNFVCSVCHGVLKRPARLPCS--HIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
S F C VC + P L C H+ C C + CP CR + + + M K+
Sbjct: 68 SLFECPVCFDYVLPPI-LQCQSGHLVCSNC----RPKLTCCPTCRGPLGSIRNLAMEKVA 122
Query: 74 KTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEG--CTSQVPRGTLAEHR 131
++ CK A +GC +T P + H++ C F +CP G C Q + H
Sbjct: 123 NSV---LFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHL 179
Query: 132 QH 133
H
Sbjct: 180 MH 181
>gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens]
Length = 282
Score = 48.9 bits (115), Expect = 4e-06
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 16 SNFVCSVCHGVLKRPARLPCS--HIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
S F C VC + P L C H+ C C + CP CR + + + M K+
Sbjct: 37 SLFECPVCFDYVLPPI-LQCQSGHLVCSNC----RPKLTCCPTCRGPLGSIRNLAMEKVA 91
Query: 74 KTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEG--CTSQVPRGTLAEHR 131
++ CK A +GC +T P + H++ C F +CP G C Q + H
Sbjct: 92 NSV---LFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHL 148
Query: 132 QH 133
H
Sbjct: 149 MH 150
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 48.9 bits (115), Expect = 4e-06
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 16 SNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVK 62
S+F CS+C + P PC H FCK C+ R L CP C++ +K
Sbjct: 475 SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLK 521
Score = 38.5 bits (88), Expect = 0.005
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 20 CSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCR 58
C C G L P +PC H +C++C+ R L + C CR
Sbjct: 123 CLGCRGFLSEPVTVPCGHSYCRRCLRREL--RARCRLCR 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,848,334
Number of Sequences: 37866
Number of extensions: 516842
Number of successful extensions: 2167
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 464
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.