Guide to the Human Genome
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Name: KIAA0317 Sequence: fasta or formatted (823aa) NCBI GI: 87116668
Description:

hypothetical protein LOC9870

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         40           2
 C cysteine            2.2         18           1
 D aspartate           3.8         31           2
 E glutamate           7.4         61           3
 F phenylalanine       6.3         52           3
 G glycine             5.2         43           2
 H histidine           3.4         28           1
 I isoleucine          4.1         34           2
 K lysine              5.5         45           2
 L leucine             9.4         77           2
 M methionine          1.9         16           1
 N asparagine          4.6         38           2
 P proline             5.2         43           2
 Q glutamine           4.0         33           1
 R arginine            5.3         44           2
 S serine              7.5         62           2
 T threonine           5.7         47           2
 V valine              8.4         69           3
 W tryptophan          1.2         10           1
 Y tyrosine            3.9         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9870 
NEDD4                 0.118   neural precursor cell expressed, developmentally do...
NEDD4                 0.118   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally dow...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
NEDD4L                0.116   neural precursor cell expressed, developmentally do...
HUWE1                 0.110   HECT, UBA and WWE domain containing 1 
ITCH                  0.107   itchy homolog E3 ubiquitin protein ligase 
WWP2                  0.104   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.104   WW domain containing E3 ubiquitin protein ligase 2 i...
HACE1                 0.101   HECT domain and ankyrin repeat containing, E3 ubiqu...
SMURF1                0.098   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.098   Smad ubiquitination regulatory factor 1 isoform 2 [H...
HECW1                 0.096   NEDD4-like ubiquitin-protein ligase 1 
SMURF2                0.095   SMAD specific E3 ubiquitin protein ligase 2 
WWP1                  0.095   WW domain containing E3 ubiquitin protein ligase 1 [...
HECW2                 0.093   HECT, C2 and WW domain containing E3 ubiquitin prote...
UBE3C                 0.073   ubiquitin protein ligase E3C 
UBE3B                 0.073   ubiquitin protein ligase E3B 
UBE3B                 0.073   ubiquitin protein ligase E3B 
UBE3A                 0.062   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.062   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.062   ubiquitin protein ligase E3A isoform 2 
HECTD2                0.057   HECT domain containing 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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