Guide to the Human Genome
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Name: UBE3C Sequence: fasta or formatted (1083aa) NCBI GI: 187960100
Description:

ubiquitin protein ligase E3C

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         58           2
 C cysteine            1.8         19           2
 D aspartate           4.4         48           2
 E glutamate           7.4         80           3
 F phenylalanine       6.0         65           2
 G glycine             5.0         54           3
 H histidine           2.1         23           2
 I isoleucine          5.4         58           3
 K lysine              4.6         50           2
 L leucine            13.2        143           3
 M methionine          2.3         25           2
 N asparagine          3.9         42           2
 P proline             4.6         50           2
 Q glutamine           4.5         49           2
 R arginine            6.4         69           3
 S serine              8.6         93           2
 T threonine           4.1         44           2
 V valine              6.0         65           2
 W tryptophan          0.8          9           1
 Y tyrosine            3.6         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3C 
UBE3B                 0.150   ubiquitin protein ligase E3B 
UBE3B                 0.150   ubiquitin protein ligase E3B 
UBE3A                 0.081   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.081   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.081   ubiquitin protein ligase E3A isoform 2 
HUWE1                 0.077   HECT, UBA and WWE domain containing 1 
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally dow...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4L                0.076   neural precursor cell expressed, developmentally do...
NEDD4                 0.075   neural precursor cell expressed, developmentally do...
NEDD4                 0.075   neural precursor cell expressed, developmentally do...
HACE1                 0.074   HECT domain and ankyrin repeat containing, E3 ubiqu...
WWP2                  0.072   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.072   WW domain containing E3 ubiquitin protein ligase 2 i...
SMURF1                0.071   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.071   Smad ubiquitination regulatory factor 1 isoform 2 [H...
HECW2                 0.070   HECT, C2 and WW domain containing E3 ubiquitin prote...
WWP1                  0.068   WW domain containing E3 ubiquitin protein ligase 1 [...
SMURF2                0.068   SMAD specific E3 ubiquitin protein ligase 2 
ITCH                  0.067   itchy homolog E3 ubiquitin protein ligase 
HERC4                 0.067   hect domain and RLD 4 isoform b 
HERC4                 0.067   hect domain and RLD 4 isoform a 
HECW1                 0.065   NEDD4-like ubiquitin-protein ligase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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