Guide to the Human Genome
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Name: UBE3B Sequence: fasta or formatted (1068aa) NCBI GI: 35493959
Description:

ubiquitin protein ligase E3B

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [1068aa] ubiquitin protein ligase E3B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         44           2
 C cysteine            2.4         26           2
 D aspartate           5.4         58           2
 E glutamate           6.2         66           3
 F phenylalanine       5.5         59           2
 G glycine             4.7         50           2
 H histidine           3.1         33           3
 I isoleucine          6.5         69           2
 K lysine              5.8         62           2
 L leucine            13.8        147           2
 M methionine          2.2         23           1
 N asparagine          2.7         29           2
 P proline             3.9         42           2
 Q glutamine           4.0         43           2
 R arginine            6.7         72           3
 S serine              7.6         81           2
 T threonine           5.5         59           2
 V valine              5.9         63           2
 W tryptophan          1.4         15           1
 Y tyrosine            2.5         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3B 
UBE3B                 1.000   ubiquitin protein ligase E3B 
UBE3C                 0.151   ubiquitin protein ligase E3C 
HUWE1                 0.077   HECT, UBA and WWE domain containing 1 
NEDD4                 0.074   neural precursor cell expressed, developmentally do...
NEDD4                 0.074   neural precursor cell expressed, developmentally do...
ITCH                  0.074   itchy homolog E3 ubiquitin protein ligase 
HECW2                 0.074   HECT, C2 and WW domain containing E3 ubiquitin prote...
HACE1                 0.072   HECT domain and ankyrin repeat containing, E3 ubiqu...
HECW1                 0.071   NEDD4-like ubiquitin-protein ligase 1 
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally dow...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
NEDD4L                0.070   neural precursor cell expressed, developmentally do...
WWP2                  0.069   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.069   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP1                  0.069   WW domain containing E3 ubiquitin protein ligase 1 [...
SMURF1                0.064   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.064   Smad ubiquitination regulatory factor 1 isoform 2 [H...
UBE3A                 0.063   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.063   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.063   ubiquitin protein ligase E3A isoform 2 
SMURF2                0.061   SMAD specific E3 ubiquitin protein ligase 2 
KIAA0317              0.057   hypothetical protein LOC9870 
HECTD2                0.048   HECT domain containing 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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