Guide to the Human Genome
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Name: NR1H2 Sequence: fasta or formatted (461aa) NCBI GI: 85362735
Description:

nuclear receptor subfamily 1, group H, member 2

Referenced in:

Adrenals
Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         33           2
 C cysteine            2.8         13           1
 D aspartate           4.8         22           2
 E glutamate           7.6         35           3
 F phenylalanine       3.9         18           2
 G glycine             7.8         36           3
 H histidine           1.5          7           1
 I isoleucine          3.9         18           2
 K lysine              5.2         24           3
 L leucine             8.2         38           2
 M methionine          2.2         10           1
 N asparagine          1.5          7           1
 P proline             7.8         36           2
 Q glutamine           8.0         37           4
 R arginine            7.6         35           2
 S serine              8.9         41           4
 T threonine           3.7         17           2
 V valine              5.0         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group H, member 2 [Hom... 
NR1H3                 0.563   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.562   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H4                 0.240   nuclear receptor subfamily 1, group H, member 4 [Homo...
NR1H3                 0.226   nuclear receptor subfamily 1, group H, member 3 iso...
RARG                  0.199   retinoic acid receptor, gamma isoform 1 
RARA                  0.196   retinoic acid receptor, alpha isoform 1 
RARA                  0.196   retinoic acid receptor, alpha isoform 1 
RARA                  0.194   retinoic acid receptor, alpha isoform 2 
RARG                  0.191   retinoic acid receptor, gamma isoform 2 
VDR                   0.189   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.189   vitamin D (1,25-dihydroxyvitamin D3) receptor 
THRB                  0.186   thyroid hormone receptor, beta 
THRB                  0.186   thyroid hormone receptor, beta 
THRB                  0.186   thyroid hormone receptor, beta 
RARB                  0.182   retinoic acid receptor, beta isoform 1 
NR1I2                 0.176   nuclear receptor subfamily 1, group I, member 2 isof...
THRA                  0.170   thyroid hormone receptor, alpha isoform 1 
NR1I2                 0.165   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.165   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I3                 0.159   constitutive androstane receptor isoform 3 
THRA                  0.154   thyroid hormone receptor, alpha isoform 2 
NR1I3                 0.153   constitutive androstane receptor isoform 2 
RXRB                  0.148   retinoid X receptor, beta 
NR1I3                 0.146   constitutive androstane receptor isoform 1 
RORA                  0.142   RAR-related orphan receptor A isoform a 
RORA                  0.142   RAR-related orphan receptor A isoform d 
RORA                  0.142   RAR-related orphan receptor A isoform c 
RORA                  0.142   RAR-related orphan receptor A isoform b 
NR1I3                 0.139   constitutive androstane receptor isoform 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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