Guide to the Human Genome
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Name: NR1H3 Sequence: fasta or formatted (387aa) NCBI GI: 194328806
Description:

nuclear receptor subfamily 1, group H, member 3 isoform b

Referenced in:

Adrenals
Liver
Nuclear Receptors

Other entries for this name:
alt prot [447aa] nuclear receptor subfamily 1, group H, member 3 isoform a
alt prot [402aa] nuclear receptor subfamily 1, group H, member 3 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         31           2
 C cysteine            3.1         12           1
 D aspartate           3.6         14           1
 E glutamate           8.3         32           3
 F phenylalanine       3.6         14           2
 G glycine             5.4         21           2
 H histidine           3.4         13           2
 I isoleucine          4.1         16           1
 K lysine              4.9         19           2
 L leucine            10.6         41           2
 M methionine          3.1         12           1
 N asparagine          2.3          9           1
 P proline             7.0         27           2
 Q glutamine           5.9         23           3
 R arginine            7.8         30           2
 S serine              8.5         33           2
 T threonine           2.8         11           1
 V valine              4.9         19           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group H, member 3 iso... 
NR1H3                 0.953   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.832   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H2                 0.271   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H4                 0.232   nuclear receptor subfamily 1, group H, member 4 [Homo...
RARG                  0.187   retinoic acid receptor, gamma isoform 2 
RARB                  0.180   retinoic acid receptor, beta isoform 1 
RARA                  0.178   retinoic acid receptor, alpha isoform 1 
RARA                  0.178   retinoic acid receptor, alpha isoform 1 
RARA                  0.176   retinoic acid receptor, alpha isoform 2 
RARG                  0.176   retinoic acid receptor, gamma isoform 1 
NR1I2                 0.167   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I3                 0.153   constitutive androstane receptor isoform 3 
NR1I3                 0.145   constitutive androstane receptor isoform 2 
NR1I3                 0.138   constitutive androstane receptor isoform 1 
NR4A1                 0.132   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.132   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR1I3                 0.128   constitutive androstane receptor isoform 7 
NR1I3                 0.128   constitutive androstane receptor isoform 6 
RXRG                  0.125   retinoid X receptor, gamma isoform a 
RXRA                  0.122   retinoid X receptor, alpha 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform c 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform a 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform b 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform f 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.116   hepatocyte nuclear factor 4 alpha isoform d 
NR1I2                 0.116   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.116   nuclear receptor subfamily 1, group I, member 2 isof...
NR4A2                 0.114   nuclear receptor subfamily 4, group A, member 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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