Guide to the Human Genome
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Name: NR1H3 Sequence: fasta or formatted (402aa) NCBI GI: 194294519
Description:

nuclear receptor subfamily 1, group H, member 3 isoform c

Referenced in:

Adrenals
Liver
Nuclear Receptors

Other entries for this name:
alt prot [447aa] nuclear receptor subfamily 1, group H, member 3 isoform a
alt prot [387aa] nuclear receptor subfamily 1, group H, member 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         32           2
 C cysteine            2.7         11           1
 D aspartate           3.5         14           1
 E glutamate           8.5         34           3
 F phenylalanine       4.5         18           2
 G glycine             4.5         18           2
 H histidine           3.7         15           2
 I isoleucine          4.5         18           1
 K lysine              5.0         20           2
 L leucine            10.7         43           2
 M methionine          3.0         12           1
 N asparagine          2.2          9           1
 P proline             6.7         27           2
 Q glutamine           6.5         26           3
 R arginine            8.0         32           2
 S serine              7.7         31           2
 T threonine           3.2         13           1
 V valine              5.0         20           1
 W tryptophan          0.5          2           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group H, member 3 iso... 
NR1H3                 1.000   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.804   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H2                 0.651   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H4                 0.300   nuclear receptor subfamily 1, group H, member 4 [Homo...
RARG                  0.239   retinoic acid receptor, gamma isoform 2 
VDR                   0.234   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.234   vitamin D (1,25-dihydroxyvitamin D3) receptor 
THRB                  0.234   thyroid hormone receptor, beta 
THRB                  0.234   thyroid hormone receptor, beta 
THRB                  0.234   thyroid hormone receptor, beta 
RARA                  0.232   retinoic acid receptor, alpha isoform 1 
RARA                  0.232   retinoic acid receptor, alpha isoform 1 
RARG                  0.232   retinoic acid receptor, gamma isoform 1 
RARA                  0.230   retinoic acid receptor, alpha isoform 2 
RARB                  0.224   retinoic acid receptor, beta isoform 1 
THRA                  0.218   thyroid hormone receptor, alpha isoform 1 
NR1I2                 0.209   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I3                 0.207   constitutive androstane receptor isoform 3 
NR1I3                 0.200   constitutive androstane receptor isoform 2 
THRA                  0.198   thyroid hormone receptor, alpha isoform 2 
NR1I3                 0.192   constitutive androstane receptor isoform 1 
NR1I3                 0.182   constitutive androstane receptor isoform 7 
NR1I3                 0.182   constitutive androstane receptor isoform 6 
NR4A1                 0.168   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.168   nuclear receptor subfamily 4, group A, member 1 [Hom...
PPARA                 0.167   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.167   peroxisome proliferative activated receptor, alpha [H...
NR4A2                 0.164   nuclear receptor subfamily 4, group A, member 2 [Homo...
RARB                  0.160   retinoic acid receptor, beta isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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