Guide to the Human Genome
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Name: NR1I2 Sequence: fasta or formatted (434aa) NCBI GI: 34398348
Description:

nuclear receptor subfamily 1, group I, member 2 isoform 1

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [473aa] nuclear receptor subfamily 1, group I, member 2 isoform 2
alt prot [397aa] nuclear receptor subfamily 1, group I, member 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         26           2
 C cysteine            3.7         16           1
 D aspartate           3.9         17           1
 E glutamate           8.3         36           3
 F phenylalanine       5.5         24           2
 G glycine             6.2         27           2
 H histidine           2.5         11           1
 I isoleucine          4.4         19           2
 K lysine              6.5         28           2
 L leucine            10.1         44           3
 M methionine          4.4         19           2
 N asparagine          2.3         10           1
 P proline             4.6         20           2
 Q glutamine           5.8         25           2
 R arginine            7.6         33           2
 S serine              6.2         27           2
 T threonine           4.8         21           2
 V valine              4.4         19           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group I, member 2 isof... 
NR1I2                 0.999   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.893   nuclear receptor subfamily 1, group I, member 2 isof...
VDR                   0.319   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.319   vitamin D (1,25-dihydroxyvitamin D3) receptor 
NR1I3                 0.304   constitutive androstane receptor isoform 3 
NR1I3                 0.303   constitutive androstane receptor isoform 2 
NR1I3                 0.296   constitutive androstane receptor isoform 1 
NR1I3                 0.271   constitutive androstane receptor isoform 7 
NR1I3                 0.265   constitutive androstane receptor isoform 6 
NR1I3                 0.245   constitutive androstane receptor isoform 10 
NR1I3                 0.243   constitutive androstane receptor isoform 4 
NR1I3                 0.242   constitutive androstane receptor isoform 5 
NR1I3                 0.238   constitutive androstane receptor isoform 9 
NR1I3                 0.213   constitutive androstane receptor isoform 14 
NR1I3                 0.208   constitutive androstane receptor isoform 8 
NR1I3                 0.206   constitutive androstane receptor isoform 13 
NR1I3                 0.203   constitutive androstane receptor isoform 12 
NR1H2                 0.174   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H3                 0.173   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.173   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H4                 0.163   nuclear receptor subfamily 1, group H, member 4 [Homo...
THRB                  0.157   thyroid hormone receptor, beta 
THRB                  0.157   thyroid hormone receptor, beta 
THRB                  0.157   thyroid hormone receptor, beta 
RARB                  0.145   retinoic acid receptor, beta isoform 1 
THRA                  0.144   thyroid hormone receptor, alpha isoform 1 
RARA                  0.141   retinoic acid receptor, alpha isoform 2 
RARA                  0.139   retinoic acid receptor, alpha isoform 1 
RARA                  0.139   retinoic acid receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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