Guide to the Human Genome
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Name: NR1I2 Sequence: fasta or formatted (473aa) NCBI GI: 11863132
Description:

nuclear receptor subfamily 1, group I, member 2 isoform 2

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [397aa] nuclear receptor subfamily 1, group I, member 2 isoform 3
alt prot [434aa] nuclear receptor subfamily 1, group I, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         33           3
 C cysteine            3.4         16           1
 D aspartate           3.6         17           1
 E glutamate           8.2         39           3
 F phenylalanine       5.3         25           2
 G glycine             6.1         29           2
 H histidine           3.2         15           2
 I isoleucine          4.2         20           2
 K lysine              6.1         29           2
 L leucine            10.1         48           3
 M methionine          4.0         19           2
 N asparagine          2.5         12           1
 P proline             5.1         24           2
 Q glutamine           5.3         25           2
 R arginine            7.6         36           2
 S serine              6.3         30           2
 T threonine           5.1         24           2
 V valine              4.2         20           2
 W tryptophan          0.8          4           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 1, group I, member 2 isof... 
NR1I2                 0.915   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.817   nuclear receptor subfamily 1, group I, member 2 isof...
VDR                   0.293   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.293   vitamin D (1,25-dihydroxyvitamin D3) receptor 
NR1I3                 0.279   constitutive androstane receptor isoform 3 
NR1I3                 0.278   constitutive androstane receptor isoform 2 
NR1I3                 0.271   constitutive androstane receptor isoform 1 
NR1I3                 0.248   constitutive androstane receptor isoform 7 
NR1I3                 0.243   constitutive androstane receptor isoform 6 
NR1I3                 0.224   constitutive androstane receptor isoform 10 
NR1I3                 0.222   constitutive androstane receptor isoform 4 
NR1I3                 0.221   constitutive androstane receptor isoform 5 
NR1I3                 0.218   constitutive androstane receptor isoform 9 
NR1I3                 0.195   constitutive androstane receptor isoform 14 
NR1I3                 0.190   constitutive androstane receptor isoform 8 
NR1I3                 0.188   constitutive androstane receptor isoform 13 
NR1I3                 0.186   constitutive androstane receptor isoform 12 
NR1H2                 0.160   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H3                 0.159   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.159   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H4                 0.149   nuclear receptor subfamily 1, group H, member 4 [Homo...
THRB                  0.144   thyroid hormone receptor, beta 
THRB                  0.144   thyroid hormone receptor, beta 
THRB                  0.144   thyroid hormone receptor, beta 
RARB                  0.133   retinoic acid receptor, beta isoform 1 
THRA                  0.132   thyroid hormone receptor, alpha isoform 1 
RARA                  0.129   retinoic acid receptor, alpha isoform 2 
RARA                  0.128   retinoic acid receptor, alpha isoform 1 
RARA                  0.128   retinoic acid receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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