Guide to the Human Genome
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Name: VDR Sequence: fasta or formatted (427aa) NCBI GI: 63054845
Description:

vitamin D (1,25-dihydroxyvitamin D3) receptor

Referenced in:

Nuclear Receptors

Other entries for this name:
alt mRNA [427aa] vitamin D (1,25-dihydroxyvitamin D3) receptor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         20           2
 C cysteine            4.0         17           1
 D aspartate           7.5         32           2
 E glutamate           6.6         28           3
 F phenylalanine       4.2         18           2
 G glycine             4.7         20           3
 H histidine           3.3         14           2
 I isoleucine          5.6         24           2
 K lysine              5.6         24           2
 L leucine             9.8         42           2
 M methionine          4.0         17           2
 N asparagine          3.0         13           1
 P proline             5.2         22           3
 Q glutamine           3.7         16           2
 R arginine            6.8         29           2
 S serine             10.5         45           4
 T threonine           4.2         18           1
 V valine              4.4         19           1
 W tryptophan          0.2          1           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   1.000   vitamin D (1,25-dihydroxyvitamin D3) receptor 
NR1I2                 0.326   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.326   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.313   nuclear receptor subfamily 1, group I, member 2 isof...
NR1H3                 0.218   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.218   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H2                 0.204   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR1H4                 0.172   nuclear receptor subfamily 1, group H, member 4 [Homo...
THRB                  0.160   thyroid hormone receptor, beta 
THRB                  0.160   thyroid hormone receptor, beta 
THRB                  0.160   thyroid hormone receptor, beta 
THRA                  0.155   thyroid hormone receptor, alpha isoform 1 
RARG                  0.155   retinoic acid receptor, gamma isoform 2 
RARG                  0.155   retinoic acid receptor, gamma isoform 1 
RARA                  0.148   retinoic acid receptor, alpha isoform 1 
RARA                  0.148   retinoic acid receptor, alpha isoform 2 
RARA                  0.148   retinoic acid receptor, alpha isoform 1 
THRA                  0.135   thyroid hormone receptor, alpha isoform 2 
NR1I3                 0.135   constitutive androstane receptor isoform 1 
NR1I3                 0.135   constitutive androstane receptor isoform 4 
NR1I3                 0.135   constitutive androstane receptor isoform 2 
NR1I3                 0.135   constitutive androstane receptor isoform 7 
NR1I3                 0.135   constitutive androstane receptor isoform 8 
NR1I3                 0.135   constitutive androstane receptor isoform 5 
NR1I3                 0.135   constitutive androstane receptor isoform 6 
NR1I3                 0.135   constitutive androstane receptor isoform 3 
PPARA                 0.132   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.132   peroxisome proliferative activated receptor, alpha [H...
NR1I3                 0.125   constitutive androstane receptor isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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