Guide to the Human Genome
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Name: DCP1B Sequence: fasta or formatted (617aa) NCBI GI: 40548403
Description:

decapping enzyme Dcp1b

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         49           3
 C cysteine            1.1          7           1
 D aspartate           2.8         17           2
 E glutamate           6.0         37           2
 F phenylalanine       2.6         16           2
 G glycine             5.7         35           2
 H histidine           2.1         13           1
 I isoleucine          5.2         32           2
 K lysine              5.3         33           2
 L leucine             9.7         60           3
 M methionine          1.8         11           1
 N asparagine          4.1         25           1
 P proline             9.7         60           2
 Q glutamine           9.6         59          10
 R arginine            4.4         27           2
 S serine              8.4         52           3
 T threonine           6.5         40           1
 V valine              4.4         27           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   decapping enzyme Dcp1b 
DCP1A                 0.170   DCP1 decapping enzyme homolog A 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
MAML2                 0.020   mastermind-like 2 
MUC12                 0.020   PREDICTED: mucin 12 
RBM33                 0.018   RNA binding motif protein 33 
NCOA6                 0.018   nuclear receptor coactivator 6 
MUC12                 0.017   PREDICTED: mucin 12 
EP400                 0.017   E1A binding protein p400 
MUC12                 0.017   PREDICTED: mucin 12, cell surface associated 
TSC22D1               0.017   TSC22 domain family, member 1 isoform 1 
MED15                 0.016   mediator complex subunit 15 isoform a 
AAK1                  0.016   AP2 associated kinase 1 
MUC17                 0.016   mucin 17 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
PSRC1                 0.014   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.014   proline/serine-rich coiled-coil 1 isoform a 
MUC12                 0.014   PREDICTED: mucin 12 
BLNK                  0.014   B-cell linker isoform 1 
CREBBP                0.014   CREB binding protein isoform b 
CREBBP                0.014   CREB binding protein isoform a 
ARID1A                0.014   AT rich interactive domain 1A isoform a 
ARID1A                0.014   AT rich interactive domain 1A isoform b 
RIN3                  0.014   Ras and Rab interactor 3 
MUPCDH                0.014   mucin and cadherin-like isoform 1 
EP300                 0.014   E1A binding protein p300 
PSRC1                 0.014   proline/serine-rich coiled-coil 1 isoform c 
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform d [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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