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Search of human proteins with 84105335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 635 0.0
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 185 5e-47
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 158 6e-39
gi|23097236 homeobox A9 [Homo sapiens] 97 2e-20
gi|85068580 homeobox B7 [Homo sapiens] 92 4e-19
gi|18959212 GS homeobox 2 [Homo sapiens] 92 4e-19
gi|24497513 homeobox A3 isoform a [Homo sapiens] 92 7e-19
gi|13562112 homeobox A3 isoform a [Homo sapiens] 92 7e-19
gi|24497538 homeobox C4 [Homo sapiens] 91 1e-18
gi|24497540 homeobox C4 [Homo sapiens] 91 1e-18
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 91 1e-18
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 91 1e-18
gi|5031761 homeobox A1 isoform a [Homo sapiens] 91 2e-18
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 89 6e-18
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 88 8e-18
gi|24497547 homeobox C9 [Homo sapiens] 87 2e-17
gi|23397672 homeobox D4 [Homo sapiens] 86 3e-17
gi|182765442 homeobox A10 isoform a [Homo sapiens] 86 5e-17
gi|13273315 homeobox B4 [Homo sapiens] 85 9e-17
gi|24497517 homeobox A5 [Homo sapiens] 84 1e-16
gi|11321638 homeobox C5 [Homo sapiens] 84 1e-16
gi|89257348 homeo box HB9 [Homo sapiens] 84 1e-16
gi|148613882 homeobox A4 [Homo sapiens] 84 2e-16
gi|4504469 homeobox B5 [Homo sapiens] 82 6e-16
gi|5031759 homeobox A11 [Homo sapiens] 82 8e-16
gi|19923391 homeobox D3 [Homo sapiens] 81 1e-15
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 80 2e-15
gi|24497515 homeobox A3 isoform b [Homo sapiens] 80 2e-15
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 80 3e-15
gi|194363768 homeobox D9 [Homo sapiens] 79 4e-15
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 635 bits (1638), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF 60
MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF
Sbjct: 1 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF 60
Query: 61 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL 120
ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL
Sbjct: 61 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL 120
Query: 121 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK 180
GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK
Sbjct: 121 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK 180
Query: 181 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM 240
SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM
Sbjct: 181 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM 240
Query: 241 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE 300
KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE
Sbjct: 241 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE 300
Query: 301 HAHL 304
HAHL
Sbjct: 301 HAHL 304
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 185 bits (469), Expect = 5e-47
Identities = 120/255 (47%), Positives = 144/255 (56%), Gaps = 47/255 (18%)
Query: 4 PLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YPELSTSSSSCIIAGYPN 55
P++GCLR+PH+ A GL + + + H + D ++ YP+ S S + P
Sbjct: 17 PVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQ 76
Query: 56 EEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSG 115
EE +F QH NWH P S AR P +G
Sbjct: 77 EEHIFTEQHPAFPQ-------------------SPNWHFPV-----SDARRRPNSGP-AG 111
Query: 116 GPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAEAEKRSGGKRKSDSSDS 174
G E+G+S SLG TG PGD YG + E EK+S +RK +SSD+
Sbjct: 112 GSKEMGTS---------SLGLVDTTGG---PGDDYGVLGSTANETEKKSSRRRK-ESSDN 158
Query: 175 QEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVW 234
QE K E +SK RKERTAFTKEQ+RELEAEFAHHNYLTRLRRYEIAVNLDL+ERQVKVW
Sbjct: 159 QENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVW 218
Query: 235 FQNRRMKWKRVKGGQ 249
FQNRRMKWKRVKGGQ
Sbjct: 219 FQNRRMKWKRVKGGQ 233
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 158 bits (399), Expect = 6e-39
Identities = 86/120 (71%), Positives = 95/120 (79%), Gaps = 5/120 (4%)
Query: 131 SSSLGSSTPTGAACAPGD-YGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRK 189
+SSLG TG PGD YG + E EK+S +RK +SSD+QE K E +SK RK
Sbjct: 3 TSSLGLVDTTGG---PGDDYGVLGSTANETEKKSSRRRK-ESSDNQENRGKPEGSSKARK 58
Query: 190 ERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 249
ERTAFTKEQ+RELEAEFAHHNYLTRLRRYEIAVNLDL+ERQVKVWFQNRRMKWKRVKGGQ
Sbjct: 59 ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQ 118
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 97.1 bits (240), Expect = 2e-20
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 20/189 (10%)
Query: 70 HHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDS---GGPPELGSSP-- 124
+HHHHHH + H Q A + + P+ S P S G PE S+
Sbjct: 83 YHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRG 142
Query: 125 --PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----ALSPAEAEKRSGGKRKSDSSDSQE 176
P L +++ SL T AC P D +Q A S AE SGG + ++
Sbjct: 143 DCPTLDTHTLSL-----TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPA 197
Query: 177 GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQ 236
N+ ++ RK+R +TK Q ELE EF + YLTR RRYE+A L+LTERQVK+WFQ
Sbjct: 198 ANWLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ 255
Query: 237 NRRMKWKRV 245
NRRMK K++
Sbjct: 256 NRRMKMKKI 264
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 92.4 bits (228), Expect = 4e-19
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 144 CAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK-----SEVNSKPRKERTAFTKEQ 198
CAP + + P ++ K +G K + DS + E N++ + ++ R +T+ Q
Sbjct: 89 CAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQ 148
Query: 199 IRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVK-------GGQQG 251
ELE EF ++ YLTR RR EIA L LTERQ+K+WFQNRRMKWK+ GQ
Sbjct: 149 TLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDR 208
Query: 252 AAAREKE 258
A A E+E
Sbjct: 209 AEAEEEE 215
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 92.4 bits (228), Expect = 4e-19
Identities = 64/187 (34%), Positives = 85/187 (45%), Gaps = 44/187 (23%)
Query: 64 HHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSS 123
+H HHHH HHHHHHQ QQ P SAA ++
Sbjct: 123 NHAHHHHHPPQHHHHHHQPQQ---------------PGSAAA---------------AAA 152
Query: 124 PPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEV 183
+ +++LG C Y P + G SD+S G
Sbjct: 153 AAAAAAAAAALGHPQHHAPVCTATTYN--VADPRRFHCLTMGG--SDASQVPNG------ 202
Query: 184 NSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWK 243
++ RTAFT Q+ ELE EF+ + YL+RLRR EIA L+L+E+QVK+WFQNRR+K K
Sbjct: 203 ----KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHK 258
Query: 244 RVKGGQQ 250
+ G Q
Sbjct: 259 KEGKGTQ 265
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 91.7 bits (226), Expect = 7e-19
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 95 PQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQAL 154
PQ + P A + P S PP+ S+ P + + S ++PT A + +
Sbjct: 105 PQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVA---------KQI 155
Query: 155 SPAEAEKRSGGKRKSDSSDSQE---GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNY 211
P E R K+K+ SS S E G+ + ++ RTA+T Q+ ELE EF + Y
Sbjct: 156 FPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 215
Query: 212 LTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 249
L R RR E+A L+LTERQ+K+WFQNRRMK+K+ + G+
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 91.7 bits (226), Expect = 7e-19
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 95 PQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQAL 154
PQ + P A + P S PP+ S+ P + + S ++PT A + +
Sbjct: 105 PQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVA---------KQI 155
Query: 155 SPAEAEKRSGGKRKSDSSDSQE---GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNY 211
P E R K+K+ SS S E G+ + ++ RTA+T Q+ ELE EF + Y
Sbjct: 156 FPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 215
Query: 212 LTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 249
L R RR E+A L+LTERQ+K+WFQNRRMK+K+ + G+
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 91.3 bits (225), Expect = 1e-18
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 72 HHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNS 131
HHH + + + + + P ++ H GP + G P S
Sbjct: 47 HHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH---------GPAQAGHHHP---EKS 94
Query: 132 SSLGSSTP-TGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVN-----S 185
SL P +GA+ +P PA S ++ + + S VN
Sbjct: 95 QSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG 154
Query: 186 KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
+P++ RTA+T++Q+ ELE EF ++ YLTR RR EIA +L L+ERQ+K+WFQNRRMKWK+
Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 213
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 91.3 bits (225), Expect = 1e-18
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 72 HHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNS 131
HHH + + + + + P ++ H GP + G P S
Sbjct: 47 HHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH---------GPAQAGHHHP---EKS 94
Query: 132 SSLGSSTP-TGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVN-----S 185
SL P +GA+ +P PA S ++ + + S VN
Sbjct: 95 QSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG 154
Query: 186 KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
+P++ RTA+T++Q+ ELE EF ++ YLTR RR EIA +L L+ERQ+K+WFQNRRMKWK+
Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 213
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 90.9 bits (224), Expect = 1e-18
Identities = 63/153 (41%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 101 PSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAE 160
PS AR P+ PP PP NS + P G A APG G A A
Sbjct: 27 PSWARLRPTRPPE---PPSTRQRPPGPRENSPV--APGPPGGAAAPGGAGTTPQGTATAA 81
Query: 161 KRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEI 220
K KRK SDS+ G KPR+ RTAFT EQ+ LE +F YL+ R +
Sbjct: 82 KP---KRKRTGSDSKSG--------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNL 130
Query: 221 AVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAA 253
A++L LTE QVK+WFQNRR KWK+ G +A
Sbjct: 131 ALSLSLTETQVKIWFQNRRTKWKKQNPGADTSA 163
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 90.9 bits (224), Expect = 1e-18
Identities = 72/215 (33%), Positives = 92/215 (42%), Gaps = 52/215 (24%)
Query: 73 HHHHHHHHQQQQHQAL---QTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCS 129
HHHH HH QQ A Q+ LPQ P QP P +LGS+ +
Sbjct: 84 HHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQ------QPPPPPPQQLGSAASAPRT 137
Query: 130 NSSS------LGSSTPTGAACAPGDYGRQALSPAEAEKRSGG---------------KRK 168
++SS LG S P AACAP Y SP K+ K K
Sbjct: 138 STSSFLIKDILGDSKPL-AACAP--YSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK 194
Query: 169 SDSSDSQEGNYKS---------EVNS----------KPRKERTAFTKEQIRELEAEFAHH 209
D + + + K E+ S KPRK RTAF+ Q+ +LE F
Sbjct: 195 LDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQ 254
Query: 210 NYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
YL+ R ++A L+LT+ QVK W+QNRR KWKR
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 90.5 bits (223), Expect = 2e-18
Identities = 83/281 (29%), Positives = 115/281 (40%), Gaps = 76/281 (27%)
Query: 36 MSYPELSTSSS-SCIIAGYPNEEGMFASQH--------------------HRGHHHHHHH 74
+ YP LS+ S +C YP++ + Q G HHHHH
Sbjct: 10 LEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQIGSPHHHHH 69
Query: 75 HHHHHHQ------------QQQHQALQTNWHLPQMSSPPSAARHSLCLQPD-SGGPPELG 121
HHHHH Q H + ++ S+P S ++L + D SGG P+
Sbjct: 70 HHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSP--YALNQEADVSGGYPQC- 126
Query: 122 SSPPVLCSNSSSL-------GSSTPTGAACAPG----DYGRQ-----------ALSPAEA 159
+P V N SS GA +P YG++ +LSP A
Sbjct: 127 -APAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHA 185
Query: 160 EKRSGGKRKSDSSDSQEGNY---KSEVN-------------SKPRKERTAFTKEQIRELE 203
+ + + + S + K + N +P RT FT +Q+ ELE
Sbjct: 186 SHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELE 245
Query: 204 AEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
EF + YLTR RR EIA +L L E QVK+WFQNRRMK K+
Sbjct: 246 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 286
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 88.6 bits (218), Expect = 6e-18
Identities = 57/145 (39%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 116 GPPELGSSPPVLCSNSSSLG-------SSTPTGAACAPGDYGRQALSPAEAEKRSGGKRK 168
G E +SP +++ G + P G A APG G A A K KRK
Sbjct: 192 GAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP---KRK 248
Query: 169 SDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTE 228
SDS+ G KPR+ RTAFT EQ+ LE +F YL+ R +A++L LTE
Sbjct: 249 RTGSDSKSG--------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE 300
Query: 229 RQVKVWFQNRRMKWKRVKGGQQGAA 253
QVK+WFQNRR KWK+ G +A
Sbjct: 301 TQVKIWFQNRRTKWKKQNPGADTSA 325
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 88.2 bits (217), Expect = 8e-18
Identities = 57/145 (39%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 116 GPPELGSSPPVLCSNSSSLG-------SSTPTGAACAPGDYGRQALSPAEAEKRSGGKRK 168
G E +SP +++ G + P G A APG G A A K KRK
Sbjct: 595 GAAETDASPGATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP---KRK 651
Query: 169 SDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTE 228
SDS+ G KPR+ RTAFT EQ+ LE +F YL+ R +A++L LTE
Sbjct: 652 RTGSDSKSG--------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE 703
Query: 229 RQVKVWFQNRRMKWKRVKGGQQGAA 253
QVK+WFQNRR KWK+ G +A
Sbjct: 704 TQVKIWFQNRRTKWKKQNPGADTSA 728
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 87.0 bits (214), Expect = 2e-17
Identities = 66/187 (35%), Positives = 90/187 (48%), Gaps = 31/187 (16%)
Query: 77 HHHHQQQQHQALQTN----WHLP-----QMSSPPSAARHSLCLQPDSG-------GPPEL 120
+H + Q H T W P S P+ RH L+PD+ GP E
Sbjct: 77 YHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH-YALKPDAYPGRRADCGPGEG 135
Query: 121 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK 180
S P + + L P Q L EA+ +G K K + +D N
Sbjct: 136 RSYPDYMYGSPGELRDRAP------------QTLPSPEADALAGSKHKEEKADLDPSNPV 183
Query: 181 SE-VNSKP-RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNR 238
+ ++++ RK+R +TK Q ELE EF + YLTR RRYE+A L+LTERQVK+WFQNR
Sbjct: 184 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNR 243
Query: 239 RMKWKRV 245
RMK K++
Sbjct: 244 RMKMKKM 250
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/155 (36%), Positives = 77/155 (49%), Gaps = 24/155 (15%)
Query: 111 QPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDY-------------GRQALSPA 157
QP G P GS+ P G P G APG+ G +A S +
Sbjct: 60 QPFGGSGPGPGSALPARGHGQEPGG---PGGHYAAPGEPCPAPPAPPPAPLPGARAYSQS 116
Query: 158 EAEKRSGGKRKSDSSDSQEGNYKSEVNS--------KPRKERTAFTKEQIRELEAEFAHH 209
+ ++ G + K VNS +P++ RTA+T++Q+ ELE EF +
Sbjct: 117 DPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFN 176
Query: 210 NYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
YLTR RR EIA L L+ERQ+K+WFQNRRMKWK+
Sbjct: 177 RYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 85.5 bits (210), Expect = 5e-17
Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 111 QPDSGG---PPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGR------------QALS 155
QP G PP L S +L S P AC G + + LS
Sbjct: 244 QPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELS 303
Query: 156 PAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKP-RKERTAFTKEQIRELEAEFAHHNYLTR 214
PA +E K +S+ N + + +K RK+R +TK Q ELE EF + YLTR
Sbjct: 304 PAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTR 363
Query: 215 LRRYEIAVNLDLTERQVKVWFQNRRMKWKRV 245
RR EI+ ++ LT+RQVK+WFQNRRMK K++
Sbjct: 364 ERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 394
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 84.7 bits (208), Expect = 9e-17
Identities = 54/150 (36%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 95 PQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQAL 154
P PP L P + PP G+ P ++ SS P CA
Sbjct: 74 PPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPP-PPCAQNPLHPSPS 132
Query: 155 SPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTR 214
A E + + NY +P++ RTA+T++Q+ ELE EF ++ YLTR
Sbjct: 133 HSACKEPVVYPWMRKVHVSTVNPNY---AGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR 189
Query: 215 LRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
RR EIA L L+ERQ+K+WFQNRRMKWK+
Sbjct: 190 RRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 84.3 bits (207), Expect = 1e-16
Identities = 72/242 (29%), Positives = 104/242 (42%), Gaps = 36/242 (14%)
Query: 29 LHGRSDHMSYPELSTSSSSCIIAGYP-NEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQA 87
LH DH S E S+S Y GM S G H + + + A
Sbjct: 21 LHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGE-----RARSYAA 75
Query: 88 LQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPG 147
+ S P+ + HS QPD P + P S+S G ++ + ++ A
Sbjct: 76 SASAAPAEPRYSQPATSTHSP--QPD---PLPCSAVAPSPGSDSHHGGKNSLSNSSGASA 130
Query: 148 DYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKP-------------------- 187
D G +S E + G + + S++ + +SE + P
Sbjct: 131 DAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNI 190
Query: 188 -----RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKW 242
++ RTA+T+ Q ELE EF + YLTR RR EIA L L+ERQ+K+WFQNRRMKW
Sbjct: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250
Query: 243 KR 244
K+
Sbjct: 251 KK 252
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 84.3 bits (207), Expect = 1e-16
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 100 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEA 159
PP A +SL + P P + + A PG Y ++A PA
Sbjct: 50 PPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE 109
Query: 160 EK-RSGGKRKSDSSDSQEGNYKSEVNSKP-----------------RKERTAFTKEQIRE 201
E+ +S G+ K + + + + S+ + P ++ RT++T+ Q E
Sbjct: 110 ERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLE 169
Query: 202 LEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
LE EF + YLTR RR EIA NL L ERQ+K+WFQNRRMKWK+
Sbjct: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 84.3 bits (207), Expect = 1e-16
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 180 KSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRR 239
+S + K R+ RTAFT +Q+ ELE +F + YL+R +R+E+A +L LTE QVK+WFQNRR
Sbjct: 234 QSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRR 293
Query: 240 MKWKRVKGGQQGAA 253
MKWKR K ++ AA
Sbjct: 294 MKWKRSKKAKEQAA 307
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 84.0 bits (206), Expect = 2e-16
Identities = 63/175 (36%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 72 HHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP--PVLCS 129
H H H Q Q LQ + PP+A R P + G P GS+P P+L +
Sbjct: 128 HGLHASHVLQPQLPPPLQPR------AVPPAAPRRCEAA-PATPGVPAGGSAPACPLLLA 180
Query: 130 NSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRK 189
+ S LG G + ++ A +GG+ P++
Sbjct: 181 DKSPLGLK---GKEPVVYPWMKKIHVSAVNPSYNGGE--------------------PKR 217
Query: 190 ERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
RTA+T++Q+ ELE EF + YLTR RR EIA L L+ERQVK+WFQNRRMKWK+
Sbjct: 218 SRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 82.0 bits (201), Expect = 6e-16
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 22/164 (13%)
Query: 97 MSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACA---PGDYGRQA 153
+SSP S C DS G SSP +++SS + T A A P + Q
Sbjct: 94 LSSPESLP----CTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQL 149
Query: 154 LSPAEAEKRSGGKRKSDSSDSQEGN-----------YKSEVNSKP--RKERTAFTKEQIR 200
SP+ A R+ + + S+ + EG + S + P ++ RTA+T+ Q
Sbjct: 150 SSPSLA--RAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTL 207
Query: 201 ELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
ELE EF + YLTR RR EIA L L+ERQ+K+WFQNRRMKWK+
Sbjct: 208 ELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 251
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 81.6 bits (200), Expect = 8e-16
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 113 DSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYG-----RQALSPAEAEKRSGGKR 167
D G PP + S++ ++ A + D G R+ + AE ++R
Sbjct: 158 DYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPE 217
Query: 168 KSDSSDSQEGNYKSEVNS----KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVN 223
S S +S G+ + + + RK+R +TK QIRELE EF Y+ + +R +++
Sbjct: 218 SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277
Query: 224 LDLTERQVKVWFQNRRMKWKRV 245
L+LT+RQVK+WFQNRRMK K++
Sbjct: 278 LNLTDRQVKIWFQNRRMKEKKI 299
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 81.3 bits (199), Expect = 1e-15
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 84 QHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAA 143
Q L + PQ PP S P G P + P S+S+++
Sbjct: 106 QPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQ------ 159
Query: 144 CAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEG-NYKSEVNSKPRKERTAFTKEQIREL 202
+ P E R K+K+ + + E KS ++ RTA+T Q+ EL
Sbjct: 160 ----------IFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVEL 209
Query: 203 EAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
E EF + YL R RR E+A L+LTERQ+K+WFQNRRMK+K+
Sbjct: 210 EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 80.5 bits (197), Expect = 2e-15
Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 128 CSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEK----RSGGKRKSDSSDSQEGNYKSEV 183
C ++ + +G AP GR A AE + +SG SDS + E+
Sbjct: 105 CKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREI 164
Query: 184 NS----------KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKV 233
+S KPRK RTAFT Q+ +LE F YL+ R E+A +L+LT+ QVK
Sbjct: 165 SSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKT 224
Query: 234 WFQNRRMKWKR 244
W+QNRR KWKR
Sbjct: 225 WYQNRRTKWKR 235
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 80.1 bits (196), Expect = 2e-15
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 160 EKRSGGKRKSDSSDSQE---GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLR 216
E R K+K+ SS S E G+ + ++ RTA+T Q+ ELE EF + YL R R
Sbjct: 3 ESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 62
Query: 217 RYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 249
R E+A L+LTERQ+K+WFQNRRMK+K+ + G+
Sbjct: 63 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 95
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 79.7 bits (195), Expect = 3e-15
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 177 GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQ 236
G Y +E R RTA+T+ Q+ ELE EF + Y++R RR E+AV L+LTER +K+WFQ
Sbjct: 137 GAYAAEPEENKRT-RTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQ 195
Query: 237 NRRMKWKRVKGGQQG 251
NRRMKWK+ + ++G
Sbjct: 196 NRRMKWKKEEDKKRG 210
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 79.3 bits (194), Expect = 4e-15
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 132 SSLGSSTPTGAACAPG---DYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPR 188
+ +G++T TG + P D+ S E EK+ ++ + S R
Sbjct: 228 AGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARST-R 286
Query: 189 KERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRV 245
K+R +TK Q ELE EF + YLTR RRYE+A L+LTERQVK+WFQNRRMK K++
Sbjct: 287 KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,543,630
Number of Sequences: 37866
Number of extensions: 691288
Number of successful extensions: 7990
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 1644
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.