Guide to the Human Genome
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Name: LOC392555 Sequence: fasta or formatted (424aa) NCBI GI: 239752435
Description:

PREDICTED: similar to melanoma antigen family C, 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {424aa} PREDICTED: similar to melanoma antigen family C, 2
alt prot {347aa} PREDICTED: similar to melanoma antigen family C, 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         31           2
 C cysteine            2.6         11           1
 D aspartate           4.0         17           2
 E glutamate          10.4         44           5
 F phenylalanine       4.2         18           1
 G glycine             4.5         19           2
 H histidine           1.7          7           1
 I isoleucine          5.7         24           2
 K lysine              3.8         16           1
 L leucine             8.7         37           2
 M methionine          1.9          8           2
 N asparagine          2.4         10           1
 P proline             7.8         33           2
 Q glutamine           3.1         13           1
 R arginine            2.1          9           2
 S serine             13.4         57          10
 T threonine           4.7         20           2
 V valine              6.6         28           2
 W tryptophan          2.4         10           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to melanoma antigen family C, 2 ... 
LOC392555             1.000   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC392555             0.808   PREDICTED: similar to melanoma antigen family C, 2 ...
MAGEC2                0.545   melanoma antigen family C, 2 
LOC100292575          0.516   PREDICTED: similar to melanoma antigen family C, 2 ...
MAGEC3                0.371   melanoma antigen family C, 3 isoform 2 
MAGEC1                0.353   melanoma antigen family C, 1 
MAGEA10               0.273   melanoma antigen family A, 10 
MAGEA10               0.273   melanoma antigen family A, 10 
MAGEC3                0.255   melanoma antigen family C, 3 isoform 1 
MAGEB10               0.242   melanoma antigen family B, 10 
MAGEB4                0.231   melanoma antigen family B, 4 
MAGEB18               0.230   melanoma antigen family B, 18 
MAGEB1                0.217   melanoma antigen family B, 1 
MAGEB1                0.217   melanoma antigen family B, 1 
MAGEB1                0.217   melanoma antigen family B, 1 
MAGEA9B               0.216   melanoma antigen family A, 9 -like 
MAGEA9                0.216   melanoma antigen family A, 9 
MAGEB17               0.214   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.214   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.214   PREDICTED: melanoma antigen family B, 17 
MAGEB16               0.213   melanoma antigen family B, 16 
MAGEB2                0.212   melanoma antigen family B, 2 
MAGEA11               0.206   melanoma antigen family A, 11 isoform b 
MAGEA11               0.206   melanoma antigen family A, 11 isoform a 
LOC392435             0.200   PREDICTED: similar to hCG1811022 
LOC392435             0.200   PREDICTED: similar to hCG1811022 
LOC392435             0.200   PREDICTED: similar to hCG1811022 
MAGEB3                0.196   melanoma antigen family B, 3 
MAGEA8                0.190   melanoma antigen family A, 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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