Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 82546872
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|82546872 DNA helicase homolog PIF1 [Homo sapiens]
(641 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|82546872 DNA helicase homolog PIF1 [Homo sapiens] 1266 0.0
gi|56549696 E1A binding protein p400 [Homo sapiens] 43 0.001
gi|40254851 protein kinase PKNbeta [Homo sapiens] 41 0.004
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 36 0.12
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.16
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 35 0.21
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 35 0.28
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 35 0.28
gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] 34 0.47
gi|217416388 neuralized homolog 1B [Homo sapiens] 33 0.62
gi|62953127 polyhomeotic 1-like [Homo sapiens] 33 0.62
gi|236459851 ubinuclein 2 [Homo sapiens] 33 0.81
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 33 0.81
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 33 0.81
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 33 1.1
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 33 1.1
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 33 1.1
gi|4826958 ATP-binding cassette, sub-family D, member 4 [Homo sa... 33 1.1
gi|13128980 proline rich 14 [Homo sapiens] 33 1.1
gi|13129000 meteorin, glial cell differentiation regulator [Homo... 32 1.4
gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] 32 1.8
gi|239745941 PREDICTED: hypothetical protein [Homo sapiens] 32 1.8
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 32 1.8
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 1.8
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 32 1.8
gi|110349719 titin isoform N2-A [Homo sapiens] 32 2.4
gi|110349717 titin isoform novex-2 [Homo sapiens] 32 2.4
gi|110349713 titin isoform novex-1 [Homo sapiens] 32 2.4
gi|110349715 titin isoform N2-B [Homo sapiens] 32 2.4
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 2.4
>gi|82546872 DNA helicase homolog PIF1 [Homo sapiens]
Length = 641
Score = 1266 bits (3277), Expect = 0.0
Identities = 641/641 (100%), Positives = 641/641 (100%)
Query: 1 MLSGIEAAAGEYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAP 60
MLSGIEAAAGEYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAP
Sbjct: 1 MLSGIEAAAGEYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAP 60
Query: 61 GPAGRPRCFPLRAARLFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDRLRRFLRTL 120
GPAGRPRCFPLRAARLFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDRLRRFLRTL
Sbjct: 61 GPAGRPRCFPLRAARLFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDRLRRFLRTL 120
Query: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA
Sbjct: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
Query: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKR 240
GAEPSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKR
Sbjct: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKR 240
Query: 241 ILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNC 300
ILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNC
Sbjct: 241 ILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNC 300
Query: 301 QRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFC 360
QRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFC
Sbjct: 301 QRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFC 360
Query: 361 FQSKSWKRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGI 420
FQSKSWKRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGI
Sbjct: 361 FQSKSWKRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGI 420
Query: 421 VATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQLLQLKLGAQ 480
VATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQLLQLKLGAQ
Sbjct: 421 VATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQLLQLKLGAQ 480
Query: 481 VMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWTVQATGGQLLS 540
VMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWTVQATGGQLLS
Sbjct: 481 VMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWTVQATGGQLLS 540
Query: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMA 600
RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMA
Sbjct: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMA 600
Query: 601 VRCDPRVLHFYATLRRGRSLSLESPDDDEAASDQENMDPIL 641
VRCDPRVLHFYATLRRGRSLSLESPDDDEAASDQENMDPIL
Sbjct: 601 VRCDPRVLHFYATLRRGRSLSLESPDDDEAASDQENMDPIL 641
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 42.7 bits (99), Expect = 0.001
Identities = 57/174 (32%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 41 AELSLGRNERRELMLRLQ-APGPAGRPRCFPLRAARLFTRFAEAGR---STLRLP----- 91
AEL + R+LM + + PA RP L+A+RLF + T+ P
Sbjct: 1390 AELLSKKKIPRKLMEEISTSAAPAARPAAAKLKASRLFQPVQYGQKPEGRTVAFPSTHPP 1449
Query: 92 --AHDTPGAGAVQLLLSDCPPDRLRRFLRTLRLKLAAAP-GPGPASARAQLLGPRPRDFV 148
A T + A Q L PP + F K AAAP ASA A P
Sbjct: 1450 RTAAPTTASAAPQGPLRGRPP--IATFSANPEAKAAAAPFQTSQASASAPRHQPASASST 1507
Query: 149 TISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPRWPLPVKRLSLPS 202
SP P +LRA T +T + P +PQA PS A + LP +RL LPS
Sbjct: 1508 AASPAHP--AKLRAQTTAQASTPGQPPPQPQA---PSHAAGQSALP-QRLVLPS 1555
>gi|40254851 protein kinase PKNbeta [Homo sapiens]
Length = 889
Score = 40.8 bits (94), Expect = 0.004
Identities = 51/177 (28%), Positives = 68/177 (38%), Gaps = 14/177 (7%)
Query: 84 GRSTLRLPAHDTPGAGAVQLLL--SDCPPDRLRRFLRTLRLKLAAAPGPGPASARAQLLG 141
G LR A D G VQ LL S+ ++L LR L ++ PGPGP A G
Sbjct: 36 GVENLRRVATDRRHLGHVQQLLRSSNRRLEQLHGELRELHARILL-PGPGPGPAEPVASG 94
Query: 142 PRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPRWPLPVKRLSLP 201
PRP Q R L A R L + + GAE T P +R L
Sbjct: 95 PRP------WAEQLRARHLEALRRQLHVEL-----KVKQGAENMTHTCASGTPKERKLLA 143
Query: 202 STKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGV 258
+ + L + Q V +K S+ +GS G L + + L VA + V
Sbjct: 144 AAQQMLRDSQLKVALLRMKISSLEASGSPEPGPELLAEELQHRLHVEAAVAEGAKNV 200
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 35.8 bits (81), Expect = 0.12
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 227 TGSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVA 286
TGS TG + +LG LPP S G+ + G H G G G +
Sbjct: 229 TGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGW-------S 281
Query: 287 LAQRPGVRQG 296
+A RPG R+G
Sbjct: 282 VAARPGARRG 291
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 35.4 bits (80), Expect = 0.16
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 134 SARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPRWPL 193
SAR+ + PR F+ P +P + + R P TT P EP P PR P
Sbjct: 533 SARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEP----APVPSPPRAPT 588
Query: 194 PVKRLSLPSTKPQLSEEQAAVLR 216
P PST L E++ ++LR
Sbjct: 589 P------PSTPVPLPEKRRSILR 605
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 35.0 bits (79), Expect = 0.21
Identities = 61/235 (25%), Positives = 86/235 (36%), Gaps = 52/235 (22%)
Query: 25 ELSPGGQPRRRQALRTAE-LSLGRNE------RRELMLRLQAPGPAGRPRCFPLRAARLF 77
E PG + R +R A LS G RR+L ++PG LR R
Sbjct: 1960 EAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPG---------LRRRRSE 2010
Query: 78 TRFAEAGRSTLR--LPAHDTPGAGAVQLLLSDCPPDRLRRFLRTLRLKLAAAPGPGPASA 135
AE+ S + P P AV L S C +L AAP GPA A
Sbjct: 2011 LSSAESAASAPQGASPRRGRPALPAVFLCSSRCE-------------ELRAAPRQGPAPA 2057
Query: 136 RAQLLGPRP----RDFVTISPVQPEERRLRAATRVPDT----------TLVKRPVEPQAG 181
R + RP R + P +RA P+T ++ +RP
Sbjct: 2058 RQRPPAARPSPGERPARRTTSESPSRLPVRAPAARPETVKRYASLPHISVARRPDGAVPA 2117
Query: 182 AEPSTEAPR-----WPLPVKRLSLPST--KPQLSEEQAAVLRAVLKGQSIFFTGS 229
A S +A R P P+ R++ P T + E+ +LR+ L ++ GS
Sbjct: 2118 APASADAARRSSDGEPRPLPRVAAPGTTWRRIRDEDVPHILRSTLPATALPLRGS 2172
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 34.7 bits (78), Expect = 0.28
Identities = 66/233 (28%), Positives = 85/233 (36%), Gaps = 48/233 (20%)
Query: 12 YEDSELRCRVAVEELSPG-GQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
++D+++ V + P G AL L G RR +L P R R
Sbjct: 397 HDDADVWAAVPLPAFLPRWGSGEDLAALAHLVLPAGPERRRASLLAFAEDAPPSRAR--- 453
Query: 71 LRAARLFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDRLRRFLRTLRLKLAAAPGP 130
R AE+ S LR A D+ GA D PP RR PGP
Sbjct: 454 -------RRSAESLLS-LRPSALDSGPRGA-----RDSPPGSPRR-----------RPGP 489
Query: 131 GPASARAQLLGPRPRDF-VTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAP 189
GP SA A LL P F +T +P+ A R P P P GA+P EAP
Sbjct: 490 GPRSASASLL---PDAFALTAFECEPQ------ALRRPPGPFPAAPAAPD-GADPG-EAP 538
Query: 190 RWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQ-----SIFFTGSAGTGKSYL 237
P +R P +P + A LR L + G G+ S+L
Sbjct: 539 TPPSSAQR--SPGPRPS-AHSHAGSLRPGLSASWGEPGGLRAAGGGGSTSSFL 588
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 34.7 bits (78), Expect = 0.28
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
Query: 125 AAAPGPGPASARAQLLGP-------------RPRDFVTISPVQPEER---RLRAATRVPD 168
A PGP P R +LL P R R++V P PE R +RA + +PD
Sbjct: 274 ALLPGPAPRGDRPELLTPSSLHYSTLQQQQQRTREWVARHPQVPEARDQGPIRAWSVLPD 333
Query: 169 TTLVKRPVEPQAGAEPSTEAP 189
L + P+EP EP++E P
Sbjct: 334 NFL-QLPLEP-GSTEPNSEPP 352
>gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 33.9 bits (76), Expect = 0.47
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190
GP A +LL RPR SP P R AA+R P +RP P G + TEA
Sbjct: 65 GPVLA-GKLLAKRPR-----SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAA- 117
Query: 191 WPLP 194
PLP
Sbjct: 118 -PLP 120
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 33.5 bits (75), Expect = 0.62
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 122 LKLAAAPGPGPASARAQLL--GPRPRDFVTISPVQPEERRLRAATRVPDTTL 171
L L APGP PA A A + GPR R SP E ATR PD +L
Sbjct: 241 LALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEADLRFHATRGPDVSL 292
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 33.5 bits (75), Expect = 0.62
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 139 LLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPRWPLPVKRL 198
L P+P V P + + +A T V L P+ + P AP+ P+P++
Sbjct: 445 LTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPL-----SLPPDAAPKPPIPIQ-- 497
Query: 199 SLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGV 258
+KP ++ + L A +A ++ +++G+ P GT + G+
Sbjct: 498 ----SKPPVAPIKPPQLGAAKMS-------AAQQPPPHIPVQVVGTRQP-GTAQAQALGL 545
Query: 259 AACHIGGTTLHAFAG-IGSGQAPLAQCVALAQRPGVRQ 295
A T G + SGQA LA +Q PG Q
Sbjct: 546 AQLAAAVPTSRGMPGTVQSGQAHLASSPPSSQAPGALQ 583
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 33.1 bits (74), Expect = 0.81
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 142 PRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPS---TEAPRWPLPVKRL 198
PR F+++SPV+ E R P+ +EPQ EP+ APR P P
Sbjct: 4 PRRVAFISLSPVRRREAEYPGPEREPEYPREPPRLEPQPYREPARAEPPAPREPAPRSDA 63
Query: 199 SLPSTKPQLSEEQAA 213
PS + L + + +
Sbjct: 64 QPPSREKPLPQREVS 78
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 33.1 bits (74), Expect = 0.81
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 100 AVQLLLSDCPPDRLRRFLRTLRLKLAAAPGPGPASARAQL------LGPRP--RDFVTIS 151
A+ L+S RLR RT+R + A GPGP+ R +L L RP R S
Sbjct: 3 AITFLMSSLA--RLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
Query: 152 PVQPEERRLRAATRVPDTTLVKRPVE-PQAGAEPSTEAPRW 191
P++ L A + VP+ + RPV +A P A RW
Sbjct: 61 PLE-----LAAPSLVPNASASPRPVSCRRAPPRPVPGAARW 96
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 33.1 bits (74), Expect = 0.81
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 100 AVQLLLSDCPPDRLRRFLRTLRLKLAAAPGPGPASARAQL------LGPRP--RDFVTIS 151
A+ L+S RLR RT+R + A GPGP+ R +L L RP R S
Sbjct: 3 AITFLMSSLA--RLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPS 60
Query: 152 PVQPEERRLRAATRVPDTTLVKRPVE-PQAGAEPSTEAPRW 191
P++ L A + VP+ + RPV +A P A RW
Sbjct: 61 PLE-----LAAPSLVPNASASPRPVSCRRAPPRPVPGAARW 96
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.7 bits (73), Expect = 1.1
Identities = 42/180 (23%), Positives = 56/180 (31%), Gaps = 39/180 (21%)
Query: 124 LAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAE 183
LA AP P PA A + P V ++ + P A P P A A
Sbjct: 143 LAPAPAPAPAPVAAPVAAP-----VAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 197
Query: 184 PSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRI-- 241
AP P PQ S EQ A G+ L ++
Sbjct: 198 APAPAP----------APDAAPQESAEQGA--------------NQGQRGQEPLADQLHS 233
Query: 242 -LGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAP-------LAQCVALAQRPGV 293
+ P GT A ++ G A + G + F AP A C + + PGV
Sbjct: 234 GISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSAAPGV 293
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.7 bits (73), Expect = 1.1
Identities = 42/180 (23%), Positives = 56/180 (31%), Gaps = 39/180 (21%)
Query: 124 LAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAE 183
LA AP P PA A + P V ++ + P A P P A A
Sbjct: 143 LAPAPAPAPAPVAAPVAAP-----VAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 197
Query: 184 PSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRI-- 241
AP P PQ S EQ A G+ L ++
Sbjct: 198 APAPAP----------APDAAPQESAEQGA--------------NQGQRGQEPLADQLHS 233
Query: 242 -LGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAP-------LAQCVALAQRPGV 293
+ P GT A ++ G A + G + F AP A C + + PGV
Sbjct: 234 GISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSAAPGV 293
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 32.7 bits (73), Expect = 1.1
Identities = 42/180 (23%), Positives = 56/180 (31%), Gaps = 39/180 (21%)
Query: 124 LAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAE 183
LA AP P PA A + P V ++ + P A P P A A
Sbjct: 154 LAPAPAPAPAPVAAPVAAP-----VAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAP 208
Query: 184 PSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRI-- 241
AP P PQ S EQ A G+ L ++
Sbjct: 209 APAPAP----------APDAAPQESAEQGA--------------NQGQRGQEPLADQLHS 244
Query: 242 -LGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAP-------LAQCVALAQRPGV 293
+ P GT A ++ G A + G + F AP A C + + PGV
Sbjct: 245 GISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSAAPGV 304
>gi|4826958 ATP-binding cassette, sub-family D, member 4 [Homo
sapiens]
Length = 606
Score = 32.7 bits (73), Expect = 1.1
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 182 AEPSTEAPRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRI 241
AEP+ A + L +S PS+ L ++ + + +GQS+ TG+ GTGK+ LL R+
Sbjct: 380 AEPADTA--FLLERVSISAPSSDKPLIKDLSL---KISEGQSLLITGNTGTGKTSLL-RV 433
Query: 242 LGSL 245
LG L
Sbjct: 434 LGGL 437
>gi|13128980 proline rich 14 [Homo sapiens]
Length = 585
Score = 32.7 bits (73), Expect = 1.1
Identities = 32/120 (26%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 109 PPDRLRRFLRTLRLKLAAAPGPGPASARAQLLGPRPRDFVTI----SPVQPEE------- 157
P R+ R TLR + PGP ++ P+P V + SP P E
Sbjct: 116 PLSRIHRTSSTLRRRSRTTPGPEEGPSQKVDRAPQPTLVVMLEDIASPRPPAEGFIDETP 175
Query: 158 RRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPRWP---------LPVKRLSLPSTKPQLS 208
+ A R +V++P P EP + P P L LPST P S
Sbjct: 176 NFIIPAQRAEPMRIVRQPTPPPGDLEPPFQPSALPADPLESPPTAPDPALELPSTPPPSS 235
>gi|13129000 meteorin, glial cell differentiation regulator [Homo
sapiens]
Length = 293
Score = 32.3 bits (72), Expect = 1.4
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 33/112 (29%)
Query: 53 LMLRLQAPGPAGRPRCFPLRAARLFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDR 112
L L L P P RP LR R F AG A GA++LLL++
Sbjct: 65 LRLTLGGPDPRARPGIACLRPVRPF-----AGAQVFAERA-----GGALELLLAE----- 109
Query: 113 LRRFLRTLRLKLAAAPGPGPASARAQLLGPRPRD--FVTISPVQPEERRLRA 162
GPGPA R GPR R F+ +P Q RR+ A
Sbjct: 110 ----------------GPGPAGGRCVRWGPRERRALFLQATPHQDISRRVAA 145
>gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190
GP A +LL RPR SP P R A +R P +RP P G + TEA
Sbjct: 65 GPVLA-GKLLAKRPR-----SPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAA- 117
Query: 191 WPLP 194
PLP
Sbjct: 118 -PLP 120
>gi|239745941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190
GP A +LL RPR SP P R A +R P +RP P G + TEA
Sbjct: 65 GPVLA-GKLLAKRPR-----SPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAA- 117
Query: 191 WPLP 194
PLP
Sbjct: 118 -PLP 120
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 32.0 bits (71), Expect = 1.8
Identities = 46/153 (30%), Positives = 57/153 (37%), Gaps = 29/153 (18%)
Query: 19 CRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFPL-RAARLF 77
CR ++ S G PRR L GR + PG RPR L +A+R
Sbjct: 130 CRARLQGGSSGASPRR--------LPGGRGPAAAFAVE---PGTGQRPRNTSLAQASRSG 178
Query: 78 T--RFAEAGRSTLRLP------AHDTPGAGAVQLLLSDCPPDRLRRFLRTLRLKLAAAPG 129
T A LR+P HD G +LL + P +L L R + AP
Sbjct: 179 TVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPP 238
Query: 130 PGP------ASARAQLLGPRPRDFVTISPVQPE 156
P P A+A L PR R PV PE
Sbjct: 239 PPPAPPGPNAAAHPPLRPPRAR---LQDPVDPE 268
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 134 SARAQLLGPRPRDFVTISPVQP---EERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190
S R LL P SP +P ++ + RAA P T V P P+ A P+ AP
Sbjct: 939 SPRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIVTKVHEP--PREDAAPTKPAPP 996
Query: 191 WPLPVKRLSLPSTKPQ 206
P P + L S PQ
Sbjct: 997 APPPPQNLQPESDAPQ 1012
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 1.8
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 129 GPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEA 188
GP P A+ LGP P T S P + L P++ + P+
Sbjct: 239 GPPPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPN--- 295
Query: 189 PRWPLPVKRLSLPSTKPQLSEEQAAVLRAVLKG 221
P LPV L+L T+ +L+ E+ RAVL G
Sbjct: 296 PCLALPV-GLALGPTREKLAPEEPPEKRAVLMG 327
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
++K A P P P P+P + V + V ER++ T+VP+ +P P
Sbjct: 10971 KVKKPAVPEPPP---------PKPVEEVEVPTVTKRERKIPEPTKVPEI----KPAIPLP 11017
Query: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQ 206
EP P+ VK + P +P+
Sbjct: 11018 APEPK---PKPEAEVKTIKPPPVEPE 11040
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
++K A P P P P+P + V + V ER++ T+VP+ +P P
Sbjct: 4666 KVKKPAVPEPPP---------PKPVEEVEVPTVTKRERKIPEPTKVPEI----KPAIPLP 4712
Query: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQ 206
EP P+ VK + P +P+
Sbjct: 4713 APEPK---PKPEAEVKTIKPPPVEPE 4735
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
++K A P P P P+P + V + V ER++ T+VP+ +P P
Sbjct: 4599 KVKKPAVPEPPP---------PKPVEEVEVPTVTKRERKIPEPTKVPEI----KPAIPLP 4645
Query: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQ 206
EP P+ VK + P +P+
Sbjct: 4646 APEPK---PKPEAEVKTIKPPPVEPE 4668
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 31.6 bits (70), Expect = 2.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 121 RLKLAAAPGPGPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQA 180
++K A P P P P+P + V + V ER++ T+VP+ +P P
Sbjct: 4474 KVKKPAVPEPPP---------PKPVEEVEVPTVTKRERKIPEPTKVPEI----KPAIPLP 4520
Query: 181 GAEPSTEAPRWPLPVKRLSLPSTKPQ 206
EP P+ VK + P +P+
Sbjct: 4521 APEPK---PKPEAEVKTIKPPPVEPE 4543
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 31.6 bits (70), Expect = 2.4
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 126 AAPGPG------PASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQ 179
+APGP PAS ++ +P + P R P K+P P+
Sbjct: 1277 SAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPE 1336
Query: 180 AGAEPSTE---APRWPLPVKRLSLPSTKP 205
+G E S + APR +PVK+ KP
Sbjct: 1337 SGPEQSKQKKVAPRPSIPVKQKPKEKEKP 1365
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,771,231
Number of Sequences: 37866
Number of extensions: 1261339
Number of successful extensions: 4542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 4457
Number of HSP's gapped (non-prelim): 162
length of query: 641
length of database: 18,247,518
effective HSP length: 109
effective length of query: 532
effective length of database: 14,120,124
effective search space: 7511905968
effective search space used: 7511905968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.