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Search of human proteins with 7706741
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706741 vestigial like 1 [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706741 vestigial like 1 [Homo sapiens] 539 e-153
gi|56550035 colon carcinoma related protein [Homo sapiens] 65 4e-11
gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] 65 6e-11
gi|23592242 vestigial-like 2 isoform 2 [Homo sapiens] 65 8e-11
gi|157785645 SPEG complex locus [Homo sapiens] 33 0.25
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 32 0.42
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 32 0.42
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 32 0.55
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 32 0.55
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 32 0.55
gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens] 32 0.72
gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens] 31 1.2
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 31 1.2
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 2.1
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 2.1
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 30 2.1
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 30 2.1
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 2.7
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 2.7
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 2.7
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 30 2.7
gi|51317355 RNA binding motif, single stranded interacting prote... 30 2.7
gi|51317353 RNA binding motif, single stranded interacting prote... 30 2.7
gi|51317351 RNA binding motif, single stranded interacting prote... 30 2.7
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 30 2.7
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 30 2.7
gi|154689780 son of sevenless homolog 2 [Homo sapiens] 29 3.6
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 29 3.6
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 29 3.6
>gi|7706741 vestigial like 1 [Homo sapiens]
Length = 258
Score = 539 bits (1388), Expect = e-153
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP 60
MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP
Sbjct: 1 MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTP 60
Query: 61 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA 120
SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA
Sbjct: 61 SSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLA 120
Query: 121 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR 180
RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR
Sbjct: 121 RRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLAR 180
Query: 181 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY 240
PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY
Sbjct: 181 PQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKY 240
Query: 241 SLTPPNHWGHPHRYLQHL 258
SLTPPNHWGHPHRYLQHL
Sbjct: 241 SLTPPNHWGHPHRYLQHL 258
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 65.5 bits (158), Expect = 4e-11
Identities = 54/154 (35%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 15 KQKPIKTEW-NSRCVLFTYFQGDISSVVDEHFSRALSNI----------KSPQELTPSSQ 63
K +P + E+ NSRCVLFTYFQGDI SVVDEHFSRAL KS LTP +
Sbjct: 75 KDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQAITLHPESAISKSKMGLTPLWR 134
Query: 64 SEGVMLKNDDSMSPNQWRYS-SPWTKP-----QPEVPVTNRAANCNLHVPGPMA---VNQ 114
+ +S + W S P P P+ VT + P P ++Q
Sbjct: 135 DSSALSSQRNSFPTSFWTSSYQPPPAPCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQ 194
Query: 115 FSPSLARRASVRPGELWHFSSLAGTSSLEPGYSH 148
P+ S E W + TS + P YSH
Sbjct: 195 TGPAPPPAVS----ESWPYPL---TSQVSPSYSH 221
>gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]
Length = 317
Score = 65.1 bits (157), Expect = 6e-11
Identities = 53/144 (36%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 15 KQKPIKTEW-NSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDD 73
K++P + E+ NSRCVLFTYFQGDISSVVDEHFSRALS S SS++ D
Sbjct: 72 KERPPEAEYINSRCVLFTYFQGDISSVVDEHFSRALSQPSSYSPSCTSSKAPRSSGPWRD 131
Query: 74 SMSPNQWR------YSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRP 127
P R ++S + P P P+ + A + +P A + +SP+ A +
Sbjct: 132 CSFPMSQRSFPASFWNSAYQAPVPP-PLGSPLATAHSELPF-AAADPYSPA-ALHGHLHQ 188
Query: 128 G--ELWHFSSLAGTSSLEPGYSHP 149
G E WH + P ++HP
Sbjct: 189 GATEPWHHA--------HPHHAHP 204
>gi|23592242 vestigial-like 2 isoform 2 [Homo sapiens]
Length = 143
Score = 64.7 bits (156), Expect = 8e-11
Identities = 40/73 (54%), Positives = 46/73 (63%), Gaps = 16/73 (21%)
Query: 15 KQKPIKTEW-NSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDD 73
K++P + E+ NSRCVLFTYFQGDISSVVDEHFSRALS P +PS S
Sbjct: 72 KERPPEAEYINSRCVLFTYFQGDISSVVDEHFSRALS---QPSSYSPSCTS--------- 119
Query: 74 SMSPNQWRYSSPW 86
S +P R S PW
Sbjct: 120 SKAP---RSSGPW 129
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 33.1 bits (74), Expect = 0.25
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 42 DEHFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAAN 101
D +RA S+ +P P ++ G+ + S + R E+PV A
Sbjct: 2101 DPRMARAASSEAAPHH-QPPLENRGLQKSSSFSQGEAEPRGRHRRAGAPLEIPVARLGAR 2159
Query: 102 CNLHVPGPMAVNQFSPSL-ARRASVRPGELWHFSSLAGTSSLEPGYSHPFPARHLVPEPQ 160
P A+++ PS AR ++ +P A T S P P PA+ PEP+
Sbjct: 2160 RLQESPSLSALSEAQPSSPARPSAPKPSTPKSAEPSATTPSDAPQPPAPQPAQDKAPEPR 2219
Query: 161 PDGKR 165
P+ R
Sbjct: 2220 PEPVR 2224
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 32.3 bits (72), Expect = 0.42
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 143 EPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLL 202
EP P P LV + + PL + Q A+ Q + + P + T LL
Sbjct: 312 EPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLL 371
Query: 203 F-NLPPGSVHYKKLYVSR-----GSASTSLPNETLSELETPGKYSLTPPNHWGHP 251
NLPP H +S+ S+S SL + + S TP K PP+ HP
Sbjct: 372 HQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHP 426
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 32.3 bits (72), Expect = 0.42
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 143 EPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLL 202
EP P P LV + + PL + Q A+ Q + + P + T LL
Sbjct: 312 EPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLL 371
Query: 203 F-NLPPGSVHYKKLYVSR-----GSASTSLPNETLSELETPGKYSLTPPNHWGHP 251
NLPP H +S+ S+S SL + + S TP K PP+ HP
Sbjct: 372 HQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPHISHHP 426
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.55
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 91 PEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAG 138
P+ P+ L VPGP SP ARR+S+ P L F+S+ G
Sbjct: 166 PQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.55
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 91 PEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAG 138
P+ P+ L VPGP SP ARR+S+ P L F+S+ G
Sbjct: 166 PQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.55
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 91 PEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAG 138
P+ P+ L VPGP SP ARR+S+ P L F+S+ G
Sbjct: 166 PQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
>gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens]
Length = 1088
Score = 31.6 bits (70), Expect = 0.72
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 46 SRALSNIKSPQEL-TPSSQSEGVMLKNDDSMSPNQWRYSS-----PWTKP---------- 89
S+ ++ PQ L TPS S V L S S QW ++ KP
Sbjct: 335 SQVFASDSPPQSLLTPSRNSLNVDLYELGSTSVQQWPAATLARRDSLQKPGLEAPPRAHV 394
Query: 90 --QPEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWH-FSSLAGTSSLEP-- 144
+P+ PV +R + N H P P + PSL +V H + L P
Sbjct: 395 AFRPDCPVPSRTNSFNSHQPRPGPPGKAEPSLPAPNTVTAVTAAHILHPVKSVRVLRPEP 454
Query: 145 ----GYSHP--FPARHLVPEPQP-------DGKREPLLSL 171
G SHP PA P P P D K E L+L
Sbjct: 455 QTAVGPSHPAWVPAPAPAPAPAPAPAAEGLDAKEEHALAL 494
>gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens]
Length = 330
Score = 30.8 bits (68), Expect = 1.2
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 11/162 (6%)
Query: 34 QGDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEV 93
QGD+ +D + ++++++ ++ +S + + L+ P + P P P +
Sbjct: 45 QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTT-APPVQTPLPVI 103
Query: 94 PVTNRAA---NCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHPF 150
P A N +L P P + SP +RP FS + SSL
Sbjct: 104 PHQKDPALDTNGSLVAPSPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGP 163
Query: 151 PARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
P L + P+G R+ L A P S R+ NP
Sbjct: 164 PRASLRAKTSPEGARDLL-------GPKALPGSSQPRQYNNP 198
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 30.8 bits (68), Expect = 1.2
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 11/162 (6%)
Query: 34 QGDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEV 93
QGD+ +D + ++++++ ++ +S + + L+ P + P P P +
Sbjct: 45 QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTT-APPVQTPLPVI 103
Query: 94 PVTNRAA---NCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHPF 150
P A N +L P P + SP +RP FS + SSL
Sbjct: 104 PHQKDPALDTNGSLVAPSPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGP 163
Query: 151 PARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
P L + P+G R+ L A P S R+ NP
Sbjct: 164 PRASLRAKTSPEGARDLL-------GPKALPGSSQPRQYNNP 198
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.0 bits (66), Expect = 2.1
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 11/167 (6%)
Query: 86 WTKPQPEVPVT-NRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEP 144
WTKP+P+ PV R A NL P+ + SP E ++F +
Sbjct: 935 WTKPEPQAPVAWERVAPSNLPQGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPPPEFSN 994
Query: 145 GYSHPFPA-RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGL-L 202
P PA ++L + P L L A P +R + AG+ GL
Sbjct: 995 DPEPPAPALQYLGRQSSPPRNNYSDLRQLPNAGPGAPPALGFSRFPAG-ARYAGAGGLER 1053
Query: 203 FNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWG 249
F+ S+ K+LYV LP+ SL+ PN +G
Sbjct: 1054 FSGGGRSLIKKRLYVGEPHRGPGLPHGGTGR-------SLSSPNCFG 1093
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.0 bits (66), Expect = 2.1
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 11/167 (6%)
Query: 86 WTKPQPEVPVT-NRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEP 144
WTKP+P+ PV R A NL P+ + SP E ++F +
Sbjct: 935 WTKPEPQAPVAWERVAPSNLPQGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPPPEFSN 994
Query: 145 GYSHPFPA-RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGL-L 202
P PA ++L + P L L A P +R + AG+ GL
Sbjct: 995 DPEPPAPALQYLGRQSSPPRNNYSDLRQLPNAGPGAPPALGFSRFPAG-ARYAGAGGLER 1053
Query: 203 FNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWG 249
F+ S+ K+LYV LP+ SL+ PN +G
Sbjct: 1054 FSGGGRSLIKKRLYVGEPHRGPGLPHGGTGR-------SLSSPNCFG 1093
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 30.0 bits (66), Expect = 2.1
Identities = 37/134 (27%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 83 SSPWTKPQPEVPVTNRAANCNLHVP------GPMAVNQFSPSLARRASVRPGELWHFSSL 136
SSP + P P+ P T R LH P P++ + R+ G+ ++
Sbjct: 29 SSPPSAPLPQTPPTKRPERFRLHSPRAPGSAQPISAPEGRGGAGSRSRYCHGDGKLAAAA 88
Query: 137 AGTSS---LEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPG 193
AGT L G R PEP R S R +RP+ S G PG
Sbjct: 89 AGTVGPRWLPAGQCLSEAERPRRPEPGGARSRPVAASPAASSRARSRPESSP----GAPG 144
Query: 194 QIAGSTGLLFNLPP 207
+ LL +LPP
Sbjct: 145 --SSVPALLPSLPP 156
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sapiens]
Length = 1188
Score = 30.0 bits (66), Expect = 2.1
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 11/167 (6%)
Query: 86 WTKPQPEVPVT-NRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEP 144
WTKP+P+ PV R A NL P+ + SP E ++F +
Sbjct: 935 WTKPEPQAPVAWERVAPSNLPQGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPPPEFSN 994
Query: 145 GYSHPFPA-RHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGL-L 202
P PA ++L + P L L A P +R + AG+ GL
Sbjct: 995 DPEPPAPALQYLGRQSSPPRNNYSDLRQLPNAGPGAPPALGFSRFPAG-ARYAGAGGLER 1053
Query: 203 FNLPPGSVHYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWG 249
F+ S+ K+LYV LP+ SL+ PN +G
Sbjct: 1054 FSGGGRSLIKKRLYVGEPHRGPGLPHGGTGR-------SLSSPNCFG 1093
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 83 SSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSL 142
S+P +P+P+ P T + P P+ A PG+ F SL L
Sbjct: 468 STPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPA---PGKT-QFISLKPKIPL 523
Query: 143 EPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
P +H PA P P K P + Q PQ A+ +P
Sbjct: 524 SPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSP 573
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 54 SPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVN 113
+P+E TP++ + + + + S+P T +P T A P P
Sbjct: 228 TPKEPTPTTIKSAPTTPKEPAPTTTK---SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTK 284
Query: 114 QFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHP-FPARHLVPEPQPDGKREP 167
+ +P+ + A P E A T+ +P + P PA EP P +EP
Sbjct: 285 EPAPTTTKSAPTTPKE------PAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 333
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 54 SPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVN 113
+P+E TP++ + + + + S+P T +P T A P P
Sbjct: 269 TPKEPTPTTIKSAPTTPKEPAPTTTK---SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTK 325
Query: 114 QFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHP-FPARHLVPEPQPDGKREP 167
+ +P+ + A P E A T+ +P + P PA EP P +EP
Sbjct: 326 EPAPTTTKSAPTTPKE------PAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 374
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 54 SPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVN 113
+P+E TP++ + + + + S+P T +P T A P P
Sbjct: 321 TPKEPTPTTIKSAPTTPKEPAPTTTK---SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTK 377
Query: 114 QFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHP-FPARHLVPEPQPDGKREP 167
+ +P+ + A P E A T+ +P + P PA EP P +EP
Sbjct: 378 EPAPTTTKSAPTTPKE------PAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 426
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 54 SPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVN 113
+P+E TP++ + + + + S+P T +P T A P P
Sbjct: 362 TPKEPTPTTIKSAPTTPKEPAPTTTK---SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTK 418
Query: 114 QFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHP-FPARHLVPEPQPDGKREP 167
+ +P+ + A P E A T+ +P + P PA EP P +EP
Sbjct: 419 EPAPTTTKSAPTTPKE------PAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 467
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 133 FSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
F+ + T E H F ++L P EPLL R +S +NG P
Sbjct: 184 FARMESTEKCEVVIQH-FNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRP 242
Query: 193 GQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTS 225
G G+ P + Y S S +T+
Sbjct: 243 WPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 275
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 133 FSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
F+ + T E H F ++L P EPLL R +S +NG P
Sbjct: 183 FARMESTEKCEVVIQH-FNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRP 241
Query: 193 GQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTS 225
G G+ P + Y S S +T+
Sbjct: 242 WPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 274
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 133 FSSLAGTSSLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNP 192
F+ + T E H F ++L P EPLL R +S +NG P
Sbjct: 184 FARMESTEKCEVVIQH-FNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRP 242
Query: 193 GQIAGSTGLLFNLPPGSVHYKKLYVSRGSASTS 225
G G+ P + Y S S +T+
Sbjct: 243 WPREGEAGMALTYDPTAAIQNGFYSSPYSIATN 275
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 29.6 bits (65), Expect = 2.7
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 156 VPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKL 215
+P P + PL +Q A A+ P S LL PG+ L
Sbjct: 519 LPSPVANSTSTPLTLPVQSPLATA-----ASASTSVPVSCGSSASLLRGPHPGT---SDL 570
Query: 216 YVSRGSASTSLPNETLSELETPGKYSLTPPNHWGHP 251
++S A+T+LP +E +P + P+H G+P
Sbjct: 571 HISSTPAATTLPVMIKTEPTSPTPSAFKGPSHSGNP 606
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 29.6 bits (65), Expect = 2.7
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 156 VPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFNLPPGSVHYKKL 215
+P P + PL +Q A A+ P S LL PG+ L
Sbjct: 541 LPSPVANSTSTPLTLPVQSPLATA-----ASASTSVPVSCGSSASLLRGPHPGT---SDL 592
Query: 216 YVSRGSASTSLPNETLSELETPGKYSLTPPNHWGHP 251
++S A+T+LP +E +P + P+H G+P
Sbjct: 593 HISSTPAATTLPVMIKTEPTSPTPSAFKGPSHSGNP 628
>gi|154689780 son of sevenless homolog 2 [Homo sapiens]
Length = 1332
Score = 29.3 bits (64), Expect = 3.6
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 61 SSQSEGVMLKNDD--SMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPS 118
+S S+G M +DD ++ P Q P K +P VPV A + LH P P P
Sbjct: 1159 ASNSKGNMKSDDDPPAIPPRQ----PPPPKVKPRVPVPTGAFDGPLHSPPPPPPRDPLPD 1214
Query: 119 LARRASVRPGELWHF 133
+RP E HF
Sbjct: 1215 TPPPVPLRPPE--HF 1227
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 29.3 bits (64), Expect = 3.6
Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 35 GDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVP 94
G V++EH SR L +SP L P ++ + + + D S Q S + Q P
Sbjct: 6 GSDPQVLEEHPSRKLGRYRSPTPLRP-AKGKTICTRFGDKRSSGQAGNKSE-RELQARTP 63
Query: 95 VTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHPFPARH 154
R + G P+L RA G S AG + G S A H
Sbjct: 64 APPRERGESSSPRG--------PTLRGRAKTTRGR----SQGAGATETSAGNSAATAAPH 111
Query: 155 LVPEPQPDGKREP 167
P P G P
Sbjct: 112 PTPASYPQGTISP 124
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 29.3 bits (64), Expect = 3.6
Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 35 GDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLKNDDSMSPNQWRYSSPWTKPQPEVP 94
G V++EH SR L +SP L P ++ + + + D S Q S + Q P
Sbjct: 6 GSDPQVLEEHPSRKLGRYRSPTPLRP-AKGKTICTRFGDKRSSGQAGNKSE-RELQARTP 63
Query: 95 VTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTSSLEPGYSHPFPARH 154
R + G P+L RA G S AG + G S A H
Sbjct: 64 APPRERGESSSPRG--------PTLRGRAKTTRGR----SQGAGATETSAGNSAATAAPH 111
Query: 155 LVPEPQPDGKREP 167
P P G P
Sbjct: 112 PTPASYPQGTISP 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,905,188
Number of Sequences: 37866
Number of extensions: 699026
Number of successful extensions: 1590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 71
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.