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Search of human proteins with 7706499
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 243 2e-65
gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens] 107 2e-24
gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens] 107 2e-24
gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens] 107 2e-24
gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo sa... 54 2e-08
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 49 7e-07
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 49 7e-07
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 49 7e-07
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 49 9e-07
gi|38505156 transcription elongation factor A protein 2 isoform ... 48 2e-06
gi|4507385 transcription elongation factor A protein 2 isoform a... 48 2e-06
gi|25777707 zinc ribbon domain containing 1 [Homo sapiens] 39 0.001
gi|7657709 zinc ribbon domain containing 1 [Homo sapiens] 39 0.001
gi|134031945 SCO-spondin [Homo sapiens] 33 0.038
gi|169790973 parkin isoform 3 [Homo sapiens] 31 0.25
gi|169790971 parkin isoform 2 [Homo sapiens] 31 0.25
gi|169790969 parkin isoform 1 [Homo sapiens] 31 0.25
gi|13899267 nudix-type motif 12 [Homo sapiens] 30 0.32
gi|134268640 tectorin alpha precursor [Homo sapiens] 28 1.2
gi|167466219 dpy-19-like 4 [Homo sapiens] 28 1.6
gi|223555955 defective in sister chromatid cohesion 1 [Homo sapi... 27 3.5
gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens] 27 4.6
gi|86792661 dipeptidyl peptidase III [Homo sapiens] 26 6.0
gi|18491024 dipeptidyl peptidase III [Homo sapiens] 26 6.0
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 6.0
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 6.0
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 6.0
gi|22749145 ring finger protein 217 [Homo sapiens] 26 7.9
gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens] 26 7.9
gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens] 26 7.9
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 243 bits (621), Expect = 2e-65
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
Sbjct: 1 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
Query: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
Sbjct: 61 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 107 bits (267), Expect = 2e-24
Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 1 MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
MLLF PGC +GLIVEEGQRC H ACNTC VH T KVTN KY KLKEVDD LGGAAA
Sbjct: 2 MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 59 WENVDSTAESCPK 71
WE+VDSTAE CP+
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 107 bits (267), Expect = 2e-24
Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 1 MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
MLLF PGC +GLIVEEGQRC H ACNTC VH T KVTN KY KLKEVDD LGGAAA
Sbjct: 2 MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 59 WENVDSTAESCPK 71
WE+VDSTAE CP+
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 107 bits (267), Expect = 2e-24
Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 1 MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
MLLF PGC +GLIVEEGQRC H ACNTC VH T KVTN KY KLKEVDD LGGAAA
Sbjct: 2 MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 59 WENVDSTAESCPK 71
WE+VDSTAE CP+
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo
sapiens]
Length = 125
Score = 54.3 bits (129), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKV--TNRKYPKLKEVDDVLGGAAAW 59
FC C N L +E + R +AC C Y N+ ++ E+ ++ +
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
Query: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
+ T + C KC H A F Q + A++ M +Y C CGHRW +
Sbjct: 76 PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 49.3 bits (116), Expect = 7e-07
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
+C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 248 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 285
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 49.3 bits (116), Expect = 7e-07
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
+C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 262 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 49.3 bits (116), Expect = 7e-07
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
+C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 241 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 278
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 48.9 bits (115), Expect = 9e-07
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 47.8 bits (112), Expect = 2e-06
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
+C KC + Q+QTRS+DEPMTTF C +CG+RW+
Sbjct: 233 TCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 47.8 bits (112), Expect = 2e-06
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
+C KC + Q+QTRS+DEPMTTF C +CG+RW+
Sbjct: 260 TCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>gi|25777707 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD 63
FC CG+ L + Q C C + NI + K K V LG A +V+
Sbjct: 19 FCSDCGSVLPLPGAQ--DTVTCIRCGF--NINVRDFEGKVVKTSVVFHQLGTAMPM-SVE 73
Query: 64 STAES--------CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
E CP+C H + Q RSADE T FY C N +
Sbjct: 74 EGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>gi|7657709 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD 63
FC CG+ L + Q C C + NI + K K V LG A +V+
Sbjct: 19 FCSDCGSVLPLPGAQ--DTVTCIRCGF--NINVRDFEGKVVKTSVVFHQLGTAMPM-SVE 73
Query: 64 STAES--------CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
E CP+C H + Q RSADE T FY C N +
Sbjct: 74 EGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 5 CPGCGN-GLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD 63
C GC + G + G+R H C C +HN+T + Y L W V+
Sbjct: 1964 CEGCEHQGQVHRVGERWHGGPCRVCQCLHNLTAHCS--PYCPLGSCPQ------GWVLVE 2015
Query: 64 STAESCPKCEHP 75
T ESC C P
Sbjct: 2016 GTGESCCHCALP 2027
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 30/125 (24%)
Query: 6 PGCGNGLIVEEGQR-----------CHRFACNTCPYVHN--------ITRKVTNRKYPKL 46
PGCG GL+ E QR C C C ++ T + Y
Sbjct: 186 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAY--- 242
Query: 47 KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
VD+ A W E + T + CP+C P +P C N
Sbjct: 243 -RVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWN-- 299
Query: 102 CGHRW 106
CG W
Sbjct: 300 CGCEW 304
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 30/125 (24%)
Query: 6 PGCGNGLIVEEGQR-----------CHRFACNTCPYVHN--------ITRKVTNRKYPKL 46
PGCG GL+ E QR C C C ++ T + Y
Sbjct: 307 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAY--- 363
Query: 47 KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
VD+ A W E + T + CP+C P +P C N
Sbjct: 364 -RVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWN-- 420
Query: 102 CGHRW 106
CG W
Sbjct: 421 CGCEW 425
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 30/125 (24%)
Query: 6 PGCGNGLIVEEGQR-----------CHRFACNTCPYVHN--------ITRKVTNRKYPKL 46
PGCG GL+ E QR C C C ++ T + Y
Sbjct: 335 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAY--- 391
Query: 47 KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
VD+ A W E + T + CP+C P +P C N
Sbjct: 392 -RVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWN-- 448
Query: 102 CGHRW 106
CG W
Sbjct: 449 CGCEW 453
>gi|13899267 nudix-type motif 12 [Homo sapiens]
Length = 462
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEV 49
FCP CGN +EEG CP ++ V N YP++ V
Sbjct: 283 FCPTCGNATKIEEGGYKRLCLKEDCPSLNG----VHNTSYPRVDPV 324
>gi|134268640 tectorin alpha precursor [Homo sapiens]
Length = 2155
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 54 GGAAAWENVDSTAESC---PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG 103
GG + N +++ E C KC A F+ E TTF + CN +CG
Sbjct: 846 GGLCGFYNANASDEFCLPNGKCTDNLAVFL--------ESWTTFEEICNGECG 890
>gi|167466219 dpy-19-like 4 [Homo sapiens]
Length = 723
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 17 GQRCHRFACNTCPYVHNITRKVTNRKY 43
G+ CH N PYV+ TR NR Y
Sbjct: 684 GRFCHEVKINYSPYVNYFTRVYWNRSY 710
>gi|223555955 defective in sister chromatid cohesion 1 [Homo
sapiens]
Length = 393
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 1 MLLFCPGCGN-GLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
MLLF PGC + +E C+ + +N R+ PKLK++ +L +
Sbjct: 91 MLLFIPGCKTPDQLKKEDSHCNIIHTEIFGFSNNYWE--LRRRRPKLKKLKKLL-MENPY 147
Query: 60 ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNA-QCGHRWR 107
E DS E + Q ++++E + T + NA + G WR
Sbjct: 148 EGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWR 196
>gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens]
Length = 1036
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 7 GC-GNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDST 65
GC NGLI+ G R C C V+ V + G V
Sbjct: 402 GCYANGLILAHGDRWREDDCTFCQCVNGERHCVA------------TVCGQTCTNPVKVP 449
Query: 66 AESCPKCEHP 75
E CP CE P
Sbjct: 450 GECCPVCEEP 459
>gi|86792661 dipeptidyl peptidase III [Homo sapiens]
Length = 737
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 41 RKYPKLKEVDDVLGGAAAWENVDSTAESCPKC 72
R+ LK DV GG A +E + ++ P+C
Sbjct: 623 RRLQVLKSTGDVAGGRALYEGYATVTDAPPEC 654
>gi|18491024 dipeptidyl peptidase III [Homo sapiens]
Length = 737
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 41 RKYPKLKEVDDVLGGAAAWENVDSTAESCPKC 72
R+ LK DV GG A +E + ++ P+C
Sbjct: 623 RRLQVLKSTGDVAGGRALYEGYATVTDAPPEC 654
>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 54 GGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 105
GGA AWE + +++ P+ R +Q+ P+T +K C R
Sbjct: 83 GGATAWEEL--LSQATPQVPESRPTGIQISMSPRRWPLTWLWKVIEGPCCQR 132
>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 54 GGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 105
GGA AWE + +++ P+ R +Q+ P+T +K C R
Sbjct: 83 GGATAWEEL--LSQATPQVPESRPTGIQISMSPRRWPLTWLWKVIEGPCCQR 132
>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 54 GGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 105
GGA AWE + +++ P+ R +Q+ P+T +K C R
Sbjct: 83 GGATAWEEL--LSQATPQVPESRPTGIQISMSPRRWPLTWLWKVIEGPCCQR 132
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 25.8 bits (55), Expect = 7.9
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 21 HRFACNTCPYV-----HNITRKVTNRKYPKLKEVDDVLGG-AAAWENVDSTAESCPKCEH 74
++ C TC +V H+ + N K + K+ D +L A+ E+ A+ CPKC+
Sbjct: 79 YKIQCPTCQFVWCFKCHSPWHEGVNCK--EYKKGDKLLRHWASEIEHGQRNAQKCPKCK- 135
Query: 75 PRAYFMQLQTRSADEPMTTFYKCCNA----QCGHRWR 107
+ +Q + MT CN +CG R+R
Sbjct: 136 -----IHIQRTEGCDHMTC--SQCNTNFCYRCGERYR 165
>gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens]
Length = 424
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 4 FCPGCGNGLIVEE 16
FCP CGN L VEE
Sbjct: 18 FCPYCGNSLPVEE 30
>gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens]
Length = 474
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 4 FCPGCGNGLIVEE 16
FCP CGN L VEE
Sbjct: 18 FCPYCGNSLPVEE 30
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,738,578
Number of Sequences: 37866
Number of extensions: 178311
Number of successful extensions: 563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 38
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.