Guide to the Human Genome
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Name: LOC390811 Sequence: fasta or formatted (73aa) NCBI GI: 239745943
Description:

PREDICTED: similar to hCG1647636

Not currently referenced in the text

Other entries for this name:
alt mRNA {73aa} PREDICTED: similar to hCG1647636
alt mRNA {73aa} PREDICTED: similar to hCG1647636
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          5           3
 C cysteine            9.6          7           1
 D aspartate           6.8          5           2
 E glutamate           6.8          5           2
 F phenylalanine       2.7          2           1
 G glycine             8.2          6           2
 H histidine           4.1          3           1
 I isoleucine          1.4          1           1
 K lysine              5.5          4           1
 L leucine             9.6          7           2
 M methionine          2.7          2           2
 N asparagine          2.7          2           1
 P proline             4.1          3           1
 Q glutamine           2.7          2           1
 R arginine            4.1          3           1
 S serine              4.1          3           1
 T threonine           5.5          4           1
 V valine              6.8          5           1
 W tryptophan          2.7          2           1
 Y tyrosine            2.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1647636 
LOC390811             1.000   PREDICTED: similar to hCG1647636 
LOC390811             1.000   PREDICTED: similar to hCG1647636 
POLR3K                0.586   DNA directed RNA polymerase III polypeptide K 
PDGFC                 0.029   platelet-derived growth factor C precursor 
CCNT1                 0.021   cyclin T1 
CCNT2                 0.014   cyclin T2 isoform b 
CCNT2                 0.014   cyclin T2 isoform a 
ZMYM3                 0.014   zinc finger protein 261 
ZMYM3                 0.014   zinc finger protein 261 
LOC100130600          0.014   PREDICTED: similar to hCG2014367 
LOC648262             0.014   PREDICTED: hypothetical protein 
LOC100130600          0.014   PREDICTED: similar to hCG2014367 
LOC100130600          0.014   PREDICTED: hypothetical protein LOC100130600 
LOC100288667          0.014   PREDICTED: hypothetical protein XP_002344293 
LOC100130600          0.014   PREDICTED: similar to hCG2014367 
LOC442676             0.007   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.007   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.007   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.007   PREDICTED: hypothetical protein LOC442676 
FRAS1                 0.007   Fraser syndrome 1 
PARK2                 0.007   parkin isoform 3 
PARK2                 0.007   parkin isoform 2 
PARK2                 0.007   parkin isoform 1 
LRP2                  0.007   low density lipoprotein-related protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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