Guide to the Human Genome
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Name: DSCC1 Sequence: fasta or formatted (393aa) NCBI GI: 223555955
Description:

defective in sister chromatid cohesion 1

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         22           3
 C cysteine            3.1         12           1
 D aspartate           6.9         27           2
 E glutamate           9.4         37           3
 F phenylalanine       3.3         13           1
 G glycine             5.3         21           2
 H histidine           2.0          8           1
 I isoleucine          4.8         19           2
 K lysine              7.9         31           2
 L leucine            12.7         50           2
 M methionine          2.3          9           1
 N asparagine          4.1         16           2
 P proline             4.1         16           1
 Q glutamine           5.3         21           2
 R arginine            4.1         16           4
 S serine              6.1         24           2
 T threonine           4.1         16           2
 V valine              4.6         18           1
 W tryptophan          1.3          5           1
 Y tyrosine            3.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defective in sister chromatid cohesion 1 
TRIM43                0.013   tripartite motif-containing 43 
SFI1                  0.012   spindle assembly associated Sfi1 homolog isoform a [...
SFI1                  0.012   spindle assembly associated Sfi1 homolog isoform b [...
LOC653192             0.010   PREDICTED: Tripartite motif-containing protein 43-li...
CEP55                 0.009   centrosomal protein 55kDa 
CEP55                 0.009   centrosomal protein 55kDa 
CLSPN                 0.008   claspin 
CENPE                 0.008   centromere protein E 
ADD1                  0.006   adducin 1 (alpha) isoform d 
ADD1                  0.006   adducin 1 (alpha) isoform c 
ADD1                  0.006   adducin 1 (alpha) isoform b 
ADD1                  0.006   adducin 1 (alpha) isoform a 
AASDH                 0.006   aminoadipate-semialdehyde dehydrogenase 
MARCH10               0.006   ring finger protein 190 
MARCH10               0.006   ring finger protein 190 
SYCP1                 0.006   synaptonemal complex protein 1 
MAP3K4                0.006   mitogen-activated protein kinase kinase kinase 4 iso...
MAP3K4                0.006   mitogen-activated protein kinase kinase kinase 4 iso...
CPNE6                 0.006   copine 6 
FAM76A                0.005   hypothetical protein LOC199870 isoform 4 
FAM76A                0.005   hypothetical protein LOC199870 isoform 2 
FAM76A                0.005   hypothetical protein LOC199870 isoform 1 
FAM76A                0.005   hypothetical protein LOC199870 isoform 5 
FAM76A                0.005   hypothetical protein LOC199870 isoform 3 
DDX46                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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