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Search of human proteins with 7706423
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 208 6e-55
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 57 2e-09
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 54 2e-08
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 54 2e-08
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 54 2e-08
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 47 2e-06
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 42 1e-04
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 37 0.003
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 37 0.003
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 36 0.006
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 36 0.006
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 36 0.006
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 36 0.006
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 36 0.006
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 33 0.037
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 33 0.037
gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote... 33 0.037
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 33 0.037
gi|169203577 PREDICTED: similar to small nuclear ribonucleoprote... 33 0.037
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 33 0.037
gi|169202369 PREDICTED: similar to small nuclear ribonucleoprote... 33 0.037
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 33 0.048
gi|7657313 Lsm1 protein [Homo sapiens] 31 0.18
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 0.70
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 0.70
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 0.70
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 29 0.91
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 29 0.91
gi|5901998 Sm protein F [Homo sapiens] 28 1.2
gi|10835173 nitric oxide synthase 1, neuronal [Homo sapiens] 27 4.5
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]
Length = 103
Score = 208 bits (530), Expect = 6e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD 60
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
Sbjct: 1 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD 60
Query: 61 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
Sbjct: 61 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 57.4 bits (137), Expect = 2e-09
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
+L K++DK + +K GGR GIL+GFDP +NLV+D +E + +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 74 VVCRGTSVVLI 84
VV RG S++++
Sbjct: 60 VVIRGNSIIML 70
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 54.3 bits (129), Expect = 2e-08
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
+L K+ DK +K GGR GIL+GFDP +NLV+D +E + + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 74 VVCRGTSVVLI 84
V RG S++++
Sbjct: 60 VEIRGNSIIML 70
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 54.3 bits (129), Expect = 2e-08
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
+L K+ DK +K GGR GIL+GFDP +NLV+D +E + + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 74 VVCRGTSVVLI 84
V RG S++++
Sbjct: 60 VEIRGNSIIML 70
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 54.3 bits (129), Expect = 2e-08
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
+L K+ DK +K GGR GIL+GFDP +NLV+D +E + + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 74 VVCRGTSVVLI 84
V RG S++++
Sbjct: 60 VEIRGNSIIML 70
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 47.4 bits (111), Expect = 2e-06
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 19 IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78
+DK + +K GGR GIL+G DP +NLV+D +E + G+VV RG
Sbjct: 1 MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVE--------MATSGQQNNTGMVVIRG 52
Query: 79 TSVVLI 84
S++++
Sbjct: 53 NSILML 58
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 42.0 bits (97), Expect = 1e-04
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
L YI++T+ V GR G LKGFD +NL+LD + E + + ++ Q LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERV------FSSSQGVEQVVLG 58
Query: 73 LVVCRGTSVVLI 84
L + RG +V +I
Sbjct: 59 LYIVRGDNVAVI 70
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEY--MRDPDDQYKLTEDTRQLGLV 74
++ID +R Q GR G K FD +NL+L E+ ++ + + E+ R LGLV
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 75 VCRGTSVV 82
+ RG ++V
Sbjct: 71 LLRGENLV 78
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 17 KYIDKTIRVKF----QGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLG 72
+Y+ R++ Q G + GFD +NLVLD D ++ + T+ +QLG
Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAEEIHSKTKSRKQLG 75
Query: 73 LVVCRGTSVVLI 84
++ +G ++ L+
Sbjct: 76 RIMLKGDNITLL 87
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 5 EKKKKESILDLSKYIDKTIRVKF----QGGREASGILKGFDPLLNLVLDGTIEYMRDPDD 60
+K + I + +Y+ R++ Q G + GFD +NLVLD D ++
Sbjct: 11 QKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAEE 63
Query: 61 QYKLTEDTRQLGLVVCRGTSVVLI 84
+ T+ +QLG ++ +G ++ L+
Sbjct: 64 IHSKTKSRKQLGRIMLKGGNITLL 87
>gi|169203121 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 9 KESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
K L L K +DK + +K GGR GIL GF +NL++D ++
Sbjct: 3 KAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVK 46
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 5 EKKKKESILDLSKYIDKTIRVKF----QGGREASGILKGFDPLLNLVLDGTIEYMRDPDD 60
+K + I + +Y+ R++ Q G + GFD +NLVLD D ++
Sbjct: 11 QKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAEE 63
Query: 61 QYKLTEDTRQLGLVVCRGTSVVLI 84
+ T+ +QLG ++ +G ++ L+
Sbjct: 64 IHSKTKSRKQLGRIMLKGGNITLL 87
>gi|169203577 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 9 KESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
K L L K +DK + +K GGR GIL GF +NL++D ++
Sbjct: 3 KAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVK 46
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 5 EKKKKESILDLSKYIDKTIRVKF----QGGREASGILKGFDPLLNLVLDGTIEYMRDPDD 60
+K + I + +Y+ R++ Q G + GFD +NLVLD D ++
Sbjct: 11 QKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAEE 63
Query: 61 QYKLTEDTRQLGLVVCRGTSVVLI 84
+ T+ +QLG ++ +G ++ L+
Sbjct: 64 IHSKTKSRKQLGRIMLKGGNITLL 87
>gi|169202369 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 9 KESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
K L L K +DK + +K GGR GIL GF +NL++D ++
Sbjct: 3 KAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVK 46
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
+ K I I + + +E G L GFD +N+VL+ E+ P+ + ++T +L +
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR-RIT----KLDQI 72
Query: 75 VCRGTSVVLICP 86
+ G ++ ++ P
Sbjct: 73 LLNGNNITMLVP 84
>gi|7657313 Lsm1 protein [Homo sapiens]
Length = 133
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 19 IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78
IDK V + GR G L+ D NLVL T+E + + G+ V RG
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR-----GIFVVRG 68
Query: 79 TSVVLI 84
+VVL+
Sbjct: 69 ENVVLL 74
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL--TEDTRQLG 72
L ++ID ++ Q G GI K FD +NL+L E+ + K E+ G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 73 LVVCRGTSVV 82
LV+ G ++V
Sbjct: 214 LVLLHGENLV 223
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL--TEDTRQLG 72
L ++ID ++ Q G GI K FD +NL+L E+ + K E+ G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 73 LVVCRGTSVV 82
LV+ G ++V
Sbjct: 214 LVLLHGENLV 223
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL--TEDTRQLG 72
L ++ID ++ Q G GI K FD +NL+L E+ + K E+ G
Sbjct: 154 LQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWG 213
Query: 73 LVVCRGTSVV 82
LV+ G ++V
Sbjct: 214 LVLLHGENLV 223
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 31 REASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICP 86
+E G L GFD +N+VL+ E+ P+ + ++T +L ++ G ++ ++ P
Sbjct: 5 KEIVGTLLGFDDFVNMVLEDVTEFEITPEGR-RIT----KLDQILLNGNNITMLVP 55
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 31 REASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICP 86
+E G L GFD +N+VL+ E+ P+ + ++T +L ++ G ++ ++ P
Sbjct: 5 KEIVGTLLGFDDFVNMVLEDVTEFEITPEGR-RIT----KLDQILLNGNNITMLVP 55
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
L + I + + VK G + G+L D +N+ L+ T EY+ + Q K + G
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYV---NGQLK-----NKYGDA 63
Query: 75 VCRGTSVVLICPQ 87
RG +V+ I Q
Sbjct: 64 FIRGNNVLYISTQ 76
>gi|10835173 nitric oxide synthase 1, neuronal [Homo sapiens]
Length = 1434
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 21 KTIRVKFQGGREASGILKGFDPLLNLVLDGT 51
K RV QG E + +LK +P+L+L+ G+
Sbjct: 190 KATRVSLQGRGENNELLKEIEPVLSLLTSGS 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,923,431
Number of Sequences: 37866
Number of extensions: 152111
Number of successful extensions: 347
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 33
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.