Guide to the Human Genome
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Name: FAM53C Sequence: fasta or formatted (392aa) NCBI GI: 7706139
Description:

hypothetical protein LOC51307

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [392aa] hypothetical protein LOC51307
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         23           2
 C cysteine            3.3         13           1
 D aspartate           4.1         16           1
 E glutamate           5.6         22           5
 F phenylalanine       3.3         13           2
 G glycine             5.9         23           5
 H histidine           2.3          9           1
 I isoleucine          1.8          7           1
 K lysine              3.3         13           1
 L leucine            10.2         40           1
 M methionine          0.8          3           1
 N asparagine          2.0          8           1
 P proline            13.8         54           3
 Q glutamine           5.6         22           1
 R arginine            8.7         34           2
 S serine             15.6         61           2
 T threonine           2.3          9           1
 V valine              2.8         11           1
 W tryptophan          2.0          8           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51307 
FAM53C                1.000   hypothetical protein LOC51307 
FAM53A                0.132   dorsal neural-tube nuclear protein 
FAM53B                0.108   hypothetical protein LOC9679 
MINK1                 0.034   misshapen/NIK-related kinase isoform 1 
SRRM1                 0.034   serine/arginine repetitive matrix 1 
MINK1                 0.031   misshapen/NIK-related kinase isoform 2 
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
MYO15A                0.029   myosin XV 
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
ATXN2                 0.028   ataxin 2 
FLJ22184              0.028   PREDICTED: hypothetical protein LOC80164 
FAM47C                0.028   hypothetical protein LOC442444 
ANKRD43               0.026   ankyrin repeat domain 43 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
CASKIN1               0.025   CASK interacting protein 1 
LOC100292408          0.024   PREDICTED: hypothetical protein 
FGD1                  0.024   faciogenital dysplasia protein 
SYNJ1                 0.024   synaptojanin 1 isoform a 
ZYX                   0.023   zyxin 
ZYX                   0.023   zyxin 
PHF15                 0.023   PHD finger protein 15 
PRB1                  0.023   proline-rich protein BstNI subfamily 1 isoform 1 pre...
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
APBB1IP               0.021   amyloid beta (A4) precursor protein-binding, family ...
MINK1                 0.021   misshapen/NIK-related kinase isoform 3 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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