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Search of human proteins with 7705716
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705716 nitric oxide synthase interacting protein [Homo
sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705716 nitric oxide synthase interacting protein [Homo sapiens] 609 e-175
gi|4504851 potassium channel, subfamily K, member 5 [Homo sapiens] 37 0.021
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 37 0.021
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 37 0.021
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 33 0.24
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 33 0.24
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 33 0.24
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 33 0.31
gi|40254851 protein kinase PKNbeta [Homo sapiens] 33 0.31
gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo sapi... 33 0.40
gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo sapi... 33 0.40
gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo sapiens] 33 0.40
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 33 0.40
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 33 0.40
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 33 0.40
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.53
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.53
gi|14150078 hypothetical protein LOC84273 [Homo sapiens] 32 0.53
gi|45827690 BTB and CNC homology 1 transcription factor isoform ... 32 0.90
gi|4502353 BTB and CNC homology 1 transcription factor isoform a... 32 0.90
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 32 0.90
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 32 0.90
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.90
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo... 31 1.2
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 31 1.2
gi|13236553 nucleolar protein 12 [Homo sapiens] 31 1.2
gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo sap... 31 1.5
gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo sap... 31 1.5
gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo sap... 31 1.5
gi|45439327 periplakin [Homo sapiens] 31 1.5
>gi|7705716 nitric oxide synthase interacting protein [Homo sapiens]
Length = 301
Score = 609 bits (1571), Expect = e-175
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP 60
MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
Sbjct: 1 MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP 60
Query: 61 DGYLYEREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESA 120
DGYLYEREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESA
Sbjct: 61 DGYLYEREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESA 120
Query: 121 IVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS 180
IVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS
Sbjct: 121 IVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS 180
Query: 181 RTVTCPMSGKPLRMSDLTPVHFTPLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLR 240
RTVTCPMSGKPLRMSDLTPVHFTPLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLR
Sbjct: 181 RTVTCPMSGKPLRMSDLTPVHFTPLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLR 240
Query: 241 PSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSGVKLQAEKSRPVMQ 300
PSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSGVKLQAEKSRPVMQ
Sbjct: 241 PSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSGVKLQAEKSRPVMQ 300
Query: 301 A 301
A
Sbjct: 301 A 301
>gi|4504851 potassium channel, subfamily K, member 5 [Homo sapiens]
Length = 499
Score = 37.0 bits (84), Expect = 0.021
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 78 KKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGT 137
KK R+ +++E +R+ Q + A+ ++ FL K+ + + KA+ +
Sbjct: 257 KKRRRRRKESFESSPHSRKALQVKGSTASKDVNIFSFLSKKEETYNDLIKQIGKKAMKTS 316
Query: 138 SPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDL 197
+ PGP +GP + PS + + + LE+ S+T+ G R D
Sbjct: 317 GGGETGPGPGLGPQGGGLPALPPSLVPLVVYSKNRVPTLEEVSQTLR--SKGHVSRSPDE 374
Query: 198 TPVHFTPLDSS 208
V P DSS
Sbjct: 375 EAVARAPEDSS 385
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 37.0 bits (84), Expect = 0.021
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 72 EYILHQKKEIARQMKAYEKQRGTR----REEQKELQRAASQDHVRGFLEKESAIVSRPLN 127
E +L +K++ + K E++ G R +E++KE ++ ++ R EKE A VS +
Sbjct: 87 EEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKERE-KEKEKATVSENVA 145
Query: 128 PFTAKALSGTSPDDVQPGPSV 148
A TSP V PSV
Sbjct: 146 ASAAATTPATSPPAVNTSPSV 166
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 37.0 bits (84), Expect = 0.021
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 72 EYILHQKKEIARQMKAYEKQRGTR----REEQKELQRAASQDHVRGFLEKESAIVSRPLN 127
E +L +K++ + K E++ G R +E++KE ++ ++ R EKE A VS +
Sbjct: 87 EEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKERE-KEKEKATVSENVA 145
Query: 128 PFTAKALSGTSPDDVQPGPSV 148
A TSP V PSV
Sbjct: 146 ASAAATTPATSPPAVNTSPSV 166
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 33.5 bits (75), Expect = 0.24
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 88 YEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPS 147
Y G EE++ELQR + ++ + L P T + P +QP
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQ------PPTLQPPVV 189
Query: 148 VGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDLTPVHFTPL 205
+GPP+ D + P P+ E + LE + P +G+ L L H PL
Sbjct: 190 LGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPL 247
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 33.5 bits (75), Expect = 0.24
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 88 YEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPS 147
Y G EE++ELQR + ++ + L P T + P +QP
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQ------PPTLQPPVV 189
Query: 148 VGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDLTPVHFTPL 205
+GPP+ D + P P+ E + LE + P +G+ L L H PL
Sbjct: 190 LGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPL 247
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 33.5 bits (75), Expect = 0.24
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 88 YEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPS 147
Y G EE++ELQR + ++ + L K P +QP
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLQPPVV 195
Query: 148 VGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDLTPVHFTPL 205
+GPP+ D + P P+ E + LE + P +G+ L L H PL
Sbjct: 196 LGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPL 253
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 33.1 bits (74), Expect = 0.31
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 88 YEKQRGTRREEQKELQR----------AASQDHVRGF-LEKESAIVSRPLNPFTAKALSG 136
Y G EE++ELQR S H+ + L KE L P T + +
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLRPPT- 194
Query: 137 TSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSD 196
P +QP +GPP+ D + P P+ E + LE + P +G+ L
Sbjct: 195 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDL 254
Query: 197 LTPVHFTPL 205
L H PL
Sbjct: 255 LISPHMLPL 263
>gi|40254851 protein kinase PKNbeta [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.31
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 17/156 (10%)
Query: 58 VTPDGYLYEREAILEYILHQKKEIARQMKAYEKQRGT--RREEQKELQRAASQDHVRGFL 115
+ P G L+ + + ++ ++ + RQ + + K+RG R Q L AA V L
Sbjct: 403 LVPQGLLFAQVTFCDPVIERRPRLQRQERIFSKRRGQDFLRASQMNLGMAAWGRLVMNLL 462
Query: 116 EKESAIVS------RPLNPFTAKALSG-TSPDDVQP-----GPSVGPPSKDKDKVLPSFW 163
S+ + P P T + S +P + P G + PP K LP
Sbjct: 463 PPCSSPSTISPPKGCPRTPTTLREASDPATPSNFLPKKTPLGEEMTPPPKPPRLYLPQEP 522
Query: 164 IPSLTPEAKATKLEKPSRTVTCPMSG---KPLRMSD 196
TP K +E +R P + KP R+ D
Sbjct: 523 TSEETPRTKRPHMEPRTRRGPSPPASPTRKPPRLQD 558
>gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo
sapiens]
Length = 527
Score = 32.7 bits (73), Expect = 0.40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 43 FDCCCLSLQPCHDPVVTPDGYLYEREAILEYI 74
FD C LSLQP PV TPDG +++ I+ ++
Sbjct: 39 FDHCSLSLQPFVYPVCTPDGIVFDLLNIVPWL 70
>gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo
sapiens]
Length = 520
Score = 32.7 bits (73), Expect = 0.40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 43 FDCCCLSLQPCHDPVVTPDGYLYEREAILEYI 74
FD C LSLQP PV TPDG +++ I+ ++
Sbjct: 39 FDHCSLSLQPFVYPVCTPDGIVFDLLNIVPWL 70
>gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo
sapiens]
Length = 520
Score = 32.7 bits (73), Expect = 0.40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 43 FDCCCLSLQPCHDPVVTPDGYLYEREAILEYI 74
FD C LSLQP PV TPDG +++ I+ ++
Sbjct: 39 FDHCSLSLQPFVYPVCTPDGIVFDLLNIVPWL 70
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.40
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 40 VKDFDCCCLSLQPCHDPVVTPDGYLYEREAILEYILHQKK 79
+ D C ++ + DPV+ DGY YE+EA+ +I +K+
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR 443
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.40
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 40 VKDFDCCCLSLQPCHDPVVTPDGYLYEREAILEYILHQKK 79
+ D C ++ + DPV+ DGY YE+EA+ +I +K+
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR 443
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.40
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 40 VKDFDCCCLSLQPCHDPVVTPDGYLYEREAILEYILHQKK 79
+ D C ++ + DPV+ DGY YE+EA+ +I +K+
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR 443
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 125 PLNPFTAKALS----GTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS 180
P P +AK S T P QPGP+ P + PS S P A+ KPS
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 181 -----RTVTCPMSGKPLRMSDLTP 199
+ V+ SGKPL+ ++P
Sbjct: 551 AQQSTKPVSQTGSGKPLQPPTVSP 574
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 125 PLNPFTAKALS----GTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPS 180
P P +AK S T P QPGP+ P + PS S P A+ KPS
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 181 -----RTVTCPMSGKPLRMSDLTP 199
+ V+ SGKPL+ ++P
Sbjct: 551 AQQSTKPVSQTGSGKPLQPPTVSP 574
>gi|14150078 hypothetical protein LOC84273 [Homo sapiens]
Length = 698
Score = 32.3 bits (72), Expect = 0.53
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 54 HDPVVTPD----GYLYEREAILEYIL---------HQKKEIARQMKAYEKQRGTRREEQK 100
+DPV T G + ER EYIL Q +E+ +Q + E+QR RREE++
Sbjct: 54 YDPVDTEGFGEGGDMQERFLFPEYILDPEPQPTREKQLQELQQQQEEEERQRQQRREERR 113
Query: 101 ELQ-RAASQDH 110
+ RA S++H
Sbjct: 114 QQNLRARSREH 124
>gi|45827690 BTB and CNC homology 1 transcription factor isoform a
[Homo sapiens]
Length = 736
Score = 31.6 bits (70), Expect = 0.90
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 102 LQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPG--------PSVGPPSK 153
LQ +ASQ + LEK++A+ L P K D V+ G SV P +
Sbjct: 199 LQDSASQTYESMCLEKDAALALPSLCPKYRKFQKAFGTDRVRTGESSVKDIHASVQPNER 258
Query: 154 DKDKVL---PSFWIPSLTPEAKATKLE-KPSRTVTCPMSGKPLRMSDLTPVHFTPLDSSV 209
+++ L P + + +KL +P T P S P S++TP P +SS+
Sbjct: 259 SENECLGGVPECRDLQVMLKCDESKLAMEPEETKKDPASQCPTEKSEVTPF---PHNSSI 315
Query: 210 DRVGLITRS 218
D GL + S
Sbjct: 316 DPHGLYSLS 324
>gi|4502353 BTB and CNC homology 1 transcription factor isoform a
[Homo sapiens]
Length = 736
Score = 31.6 bits (70), Expect = 0.90
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 102 LQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPG--------PSVGPPSK 153
LQ +ASQ + LEK++A+ L P K D V+ G SV P +
Sbjct: 199 LQDSASQTYESMCLEKDAALALPSLCPKYRKFQKAFGTDRVRTGESSVKDIHASVQPNER 258
Query: 154 DKDKVL---PSFWIPSLTPEAKATKLE-KPSRTVTCPMSGKPLRMSDLTPVHFTPLDSSV 209
+++ L P + + +KL +P T P S P S++TP P +SS+
Sbjct: 259 SENECLGGVPECRDLQVMLKCDESKLAMEPEETKKDPASQCPTEKSEVTPF---PHNSSI 315
Query: 210 DRVGLITRS 218
D GL + S
Sbjct: 316 DPHGLYSLS 324
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 31.6 bits (70), Expect = 0.90
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 78 KKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKE 118
KKE+ +MK EKQR RE+ K ++ +D V+ EKE
Sbjct: 526 KKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVK---EKE 563
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 31.6 bits (70), Expect = 0.90
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 77 QKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKAL 134
+KKEI ++ K +K G R+EE+K+ ++ + + L+K S +P P K L
Sbjct: 419 EKKEIKKERKELKKDEG-RKEEKKDAKKEEKRKDTKPELKKISKPDLKPFTPEVRKTL 475
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 0.90
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 128 PFTAKALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRT 182
P T +SP+ PS KDKDK S PS +PE +T E P+ T
Sbjct: 313 PGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPT 367
>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
sapiens]
Length = 1057
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 56 PVVTPDGYLY----EREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHV 111
PV+TP + E E + Q++E Q + Y+K++ +EE ++ Q+ ++
Sbjct: 757 PVMTPQFKFWAWDPEEERRRQEKWQQEQERLLQER-YQKEQDKLKEEWEKAQKEVEEEE- 814
Query: 112 RGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKV 158
R + E+E I+ + PFT +S +S D + S+ S +K+
Sbjct: 815 RRYYEEERKIIEDTVVPFT---VSSSSADQLSTSSSMTEGSGTMNKI 858
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 56 PVVTPDGYLY----EREAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHV 111
PV+TP + E E + Q++E Q + Y+K++ +EE ++ Q+ ++
Sbjct: 757 PVMTPQFKFWAWDPEEERRRQEKWQQEQERLLQER-YQKEQDKLKEEWEKAQKEVEEEE- 814
Query: 112 RGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSKDKDKV 158
R + E+E I+ + PFT +S +S D + S+ S +K+
Sbjct: 815 RRYYEEERKIIEDTVVPFT---VSSSSADQLSTSSSMTEGSGTMNKI 858
>gi|13236553 nucleolar protein 12 [Homo sapiens]
Length = 213
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 65 YEREAILEYIL-HQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESAI 121
++ E EY+ K+++ R+ A E+ + +EEQ++L+ Q++++ E+E A+
Sbjct: 22 FDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKEEQRKLREERHQEYLKMLAEREEAL 79
>gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 123 SRPLNPFTA---KALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKP 179
+RPL F A + + G P + PGP+VG S L W+P P T +
Sbjct: 17 ARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSP-----LTQDWLPRSPPTLPLTWV--- 68
Query: 180 SRTVTCPMSGKPLRMSDLTPV-HFTPLDSSV 209
+ CP R+S+ PV H PL V
Sbjct: 69 ---LRCPSHATLNRLSEDKPVGHDFPLPQLV 96
>gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 123 SRPLNPFTA---KALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKP 179
+RPL F A + + G P + PGP+VG S L W+P P T +
Sbjct: 17 ARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSP-----LTQDWLPRSPPTLPLTWV--- 68
Query: 180 SRTVTCPMSGKPLRMSDLTPV-HFTPLDSSV 209
+ CP R+S+ PV H PL V
Sbjct: 69 ---LRCPSHATLNRLSEDKPVGHDFPLPQLV 96
>gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 123 SRPLNPFTA---KALSGTSPDDVQPGPSVGPPSKDKDKVLPSFWIPSLTPEAKATKLEKP 179
+RPL F A + + G P + PGP+VG S L W+P P T +
Sbjct: 17 ARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSP-----LTQDWLPRSPPTLPLTWV--- 68
Query: 180 SRTVTCPMSGKPLRMSDLTPV-HFTPLDSSV 209
+ CP R+S+ PV H PL V
Sbjct: 69 ---LRCPSHATLNRLSEDKPVGHDFPLPQLV 96
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 30.8 bits (68), Expect = 1.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 69 AILEYILHQKKEIARQMKAYEKQRGTRREEQKELQR 104
A L + ++ E+ RQ++ E++R RRE ++E+QR
Sbjct: 1387 AELRRLQRRRTELERQLEELERERQARREAEREVQR 1422
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,611,802
Number of Sequences: 37866
Number of extensions: 622246
Number of successful extensions: 2858
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2716
Number of HSP's gapped (non-prelim): 208
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.