PDGFB 29107

Name: PDGFB	Sequence: fasta or formatted (241aa)		NCBI GI: 4505681
Description: platelet-derived growth factor beta isoform 1 preproprotein		Referenced in: Retroviral Oncogene Homologs Platelets and Megakaryocytes
Other entries for this name: alt prot [226aa] platelet-derived growth factor beta isoform 2 preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 16 3 C cysteine 4.6 11 2 D aspartate 4.1 10 2 E glutamate 7.9 19 2 F phenylalanine 2.5 6 1 G glycine 5.4 13 2 H histidine 2.9 7 1 I isoleucine 4.1 10 1 K lysine 5.8 14 2 L leucine 9.5 23 2 M methionine 1.7 4 1 N asparagine 2.9 7 2 P proline 5.8 14 2 Q glutamine 3.7 9 1 R arginine 11.2 27 2 S serine 5.8 14 1 T threonine 7.1 17 1 V valine 6.6 16 1 W tryptophan 0.8 2 1 Y tyrosine 0.8 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 platelet-derived growth factor beta isoform 1 preprop... PDGFB 0.904 platelet-derived growth factor beta isoform 2 prepro... PDGFA 0.260 platelet-derived growth factor alpha isoform 2 prepr... PDGFA 0.260 platelet-derived growth factor alpha isoform 1 prepr... VEGFB 0.058 vascular endothelial growth factor B FIGF 0.055 vascular endothelial growth factor D preproprotein [H... VEGFC 0.055 vascular endothelial growth factor C preproprotein [H... PGF 0.045 placental growth factor, vascular endothelial growth... VEGFA 0.038 vascular endothelial growth factor A isoform c precu... VEGFA 0.038 vascular endothelial growth factor A isoform b precu... VEGFA 0.038 vascular endothelial growth factor A isoform a precu... VEGFA 0.036 vascular endothelial growth factor A isoform e precu... VEGFA 0.036 vascular endothelial growth factor A isoform d precu... VEGFA 0.036 vascular endothelial growth factor A isoform g precu... VEGFA 0.036 vascular endothelial growth factor A isoform f precu... PDGFC 0.030 platelet-derived growth factor C precursor PDGFD 0.011 platelet derived growth factor D isoform 1 precursor... PDGFD 0.011 platelet derived growth factor D isoform 2 precursor... L1CAM 0.009 L1 cell adhesion molecule isoform 3 precursor [Homo... L1CAM 0.009 L1 cell adhesion molecule isoform 2 precursor WIBG 0.009 within bgcn homolog isoform 2 WIBG 0.009 within bgcn homolog isoform 1 MRPL46 0.009 mitochondrial ribosomal protein L46 CLASP1 0.006 CLIP-associating protein 1 isoform 3 CLASP1 0.006 CLIP-associating protein 1 isoform 2 CLASP1 0.006 CLIP-associating protein 1 isoform 1 EPPK1 0.006 epiplakin 1 NPHP1 0.006 nephrocystin 1 isoform 4 NPHP1 0.006 nephrocystin 1 isoform 3 NPHP1 0.006 nephrocystin 1 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.