Guide to the Human Genome
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Name: FIGF Sequence: fasta or formatted (354aa) NCBI GI: 4758378
Description:

vascular endothelial growth factor D preproprotein

Referenced in:

Platelets and Megakaryocytes
Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         15           2
 C cysteine            8.5         30           2
 D aspartate           3.7         13           1
 E glutamate           8.5         30           2
 F phenylalanine       3.7         13           2
 G glycine             2.8         10           2
 H histidine           4.2         15           1
 I isoleucine          3.7         13           2
 K lysine              6.8         24           2
 L leucine             7.1         25           2
 M methionine          2.3          8           2
 N asparagine          3.1         11           1
 P proline             6.8         24           2
 Q glutamine           4.0         14           2
 R arginine            6.8         24           2
 S serine              9.9         35           2
 T threonine           5.9         21           1
 V valine              5.4         19           3
 W tryptophan          1.4          5           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vascular endothelial growth factor D preproprotein [H... 
VEGFC                 0.317   vascular endothelial growth factor C preproprotein [H...
VEGFA                 0.061   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.060   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.060   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.060   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.060   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.060   vascular endothelial growth factor A isoform g precu...
VEGFA                 0.059   vascular endothelial growth factor A isoform f precu...
PGF                   0.054   placental growth factor, vascular endothelial growth...
VEGFB                 0.048   vascular endothelial growth factor B 
PDGFC                 0.039   platelet-derived growth factor C precursor 
PDGFB                 0.035   platelet-derived growth factor beta isoform 2 prepro...
PDGFB                 0.035   platelet-derived growth factor beta isoform 1 preprop...
PDGFA                 0.029   platelet-derived growth factor alpha isoform 2 prepr...
PDGFA                 0.029   platelet-derived growth factor alpha isoform 1 prepr...
PDGFD                 0.023   platelet derived growth factor D isoform 1 precursor...
PDGFD                 0.023   platelet derived growth factor D isoform 2 precursor...
ADAM28                0.012   ADAM metallopeptidase domain 28 isoform 3 preproprot...
ADAM28                0.012   ADAM metallopeptidase domain 28 isoform 1 preproprot...
NFXL1                 0.012   nuclear transcription factor, X-box binding-like 1 [...
THSD7B                0.012   thrombospondin, type I, domain containing 7B 
SCARF1                0.011   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.011   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.011   scavenger receptor class F, member 1 isoform 5 prec...
NFX1                  0.011   nuclear transcription factor, X-box binding 1 isofor...
PCSK5                 0.011   proprotein convertase subtilisin/kexin type 5 prepro...
LELP1                 0.011   late cornified envelope-like proline-rich 1 
NFX1                  0.010   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.010   nuclear transcription factor, X-box binding 1 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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