Guide to the Human Genome
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Name: VEGFB Sequence: fasta or formatted (207aa) NCBI GI: 4507887
Description:

vascular endothelial growth factor B

Referenced in:

Platelets and Megakaryocytes
Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         29           5
 C cysteine            3.9          8           2
 D aspartate           4.3          9           2
 E glutamate           3.4          7           2
 F phenylalanine       0.0          0           0
 G glycine             6.3         13           2
 H histidine           3.4          7           2
 I isoleucine          1.9          4           1
 K lysine              3.4          7           3
 L leucine             7.7         16           3
 M methionine          2.4          5           1
 N asparagine          0.0          0           0
 P proline            13.0         27           1
 Q glutamine           6.3         13           1
 R arginine            5.8         12           2
 S serine              8.2         17           2
 T threonine           5.8         12           2
 V valine              8.2         17           3
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vascular endothelial growth factor B 
VEGFA                 0.197   vascular endothelial growth factor A isoform f precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.197   vascular endothelial growth factor A isoform g precu...
PGF                   0.129   placental growth factor, vascular endothelial growth...
FIGF                  0.087   vascular endothelial growth factor D preproprotein [H...
VEGFC                 0.085   vascular endothelial growth factor C preproprotein [H...
PDGFB                 0.067   platelet-derived growth factor beta isoform 2 prepro...
PDGFB                 0.067   platelet-derived growth factor beta isoform 1 preprop...
PDGFA                 0.065   platelet-derived growth factor alpha isoform 1 prepr...
PDGFA                 0.062   platelet-derived growth factor alpha isoform 2 prepr...
KAT2A                 0.052   general control of amino acid synthesis 5-like 2 [H...
CDKN1C                0.050   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.050   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.050   cyclin-dependent kinase inhibitor 1C isoform a 
DIDO1                 0.047   death inducer-obliterator 1 isoform c 
HOXA3                 0.042   homeobox A3 isoform a 
HOXA3                 0.042   homeobox A3 isoform a 
PDGFC                 0.040   platelet-derived growth factor C precursor 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
SYN2                  0.037   synapsin II isoform IIa 
MAMSTR                0.035   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.035   MEF2 activating motif and SAP domain containing tran...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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