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Search of human proteins with 7661892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661892 REST corepressor 1 [Homo sapiens]
(482 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661892 REST corepressor 1 [Homo sapiens] 955 0.0
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 506 e-143
gi|209977084 REST corepressor 3 isoform c [Homo sapiens] 504 e-143
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 484 e-137
gi|27734799 REST corepressor 2 [Homo sapiens] 427 e-119
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 409 e-114
gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens] 116 5e-26
gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens] 116 5e-26
gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo sapi... 116 5e-26
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 105 9e-23
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 105 9e-23
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 96 9e-20
gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens] 78 2e-14
gi|14141170 metastasis-associated protein 2 [Homo sapiens] 73 5e-13
gi|115527080 metastasis associated protein [Homo sapiens] 67 5e-11
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 65 1e-10
gi|45267839 mesoderm induction early response 1, family member 2... 63 7e-10
gi|210031154 zinc finger protein 541 [Homo sapiens] 61 3e-09
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 57 3e-08
gi|94721313 mesoderm induction early response 1, family member 3... 57 4e-08
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 57 4e-08
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 57 4e-08
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 54 3e-07
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 54 3e-07
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 52 1e-06
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 52 1e-06
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 51 3e-06
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 50 6e-06
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 49 1e-05
gi|225735619 mesoderm induction early response 1 isoform i [Homo... 48 2e-05
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 955 bits (2469), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MVEKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAA 60
MVEKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAA
Sbjct: 1 MVEKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAA 60
Query: 61 APNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
APNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL
Sbjct: 61 APNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
Query: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA
Sbjct: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
Query: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT
Sbjct: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
Query: 241 SVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHST 300
SVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHST
Sbjct: 241 SVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHST 300
Query: 301 QAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALK 360
QAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALK
Sbjct: 301 QAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALK 360
Query: 361 EKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNF 420
EKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNF
Sbjct: 361 EKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNF 420
Query: 421 FVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYAS 480
FVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYAS
Sbjct: 421 FVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYAS 480
Query: 481 AS 482
AS
Sbjct: 481 AS 482
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 506 bits (1302), Expect = e-143
Identities = 266/425 (62%), Positives = 327/425 (76%), Gaps = 20/425 (4%)
Query: 64 NGQNKSLAAAAPNGNSSSNS---WEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
NG KS A +G SS+N + E SG SSD+EH G MRVG +YQA +P+FDP
Sbjct: 19 NGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVG-MRVGAEYQARIPEFDPG-- 75
Query: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
A + ++DN GMLVWSP ++ +AKLDEYIAIAKEKHGYN+EQALGMLFWHKHNIEKSLA
Sbjct: 76 ATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLA 135
Query: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
DLPNFTPFPDEWTVEDKVLFEQAFSFHGK+FHRIQQMLPDK+IASLVK+YYSWKKTR++T
Sbjct: 136 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRT 195
Query: 241 SVMDRHARK--QKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVK---- 294
S+MDR ARK + + +S+D++EE + + D + D KE+KKE + V K
Sbjct: 196 SLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLG 255
Query: 295 -KEKHSTQAKN---RAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQ 350
+E S Q ++ R+K +PPKGM+L+QEDV AVS + AA T+LRQLDMEL+S+KRQ+Q
Sbjct: 256 RREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQ 315
Query: 351 NIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIG 410
N KQ NSALK+K++GGIE ++ PE QK NARWTTEEQLLAVQ +RKYG+DFQAI+DVIG
Sbjct: 316 NAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIG 375
Query: 411 NKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQ--KPVKSPDN--SIKMPE 466
NK+V QVKNFFVNYRRRFN++EVLQEWEAE G + +NG ++ + KS N S K +
Sbjct: 376 NKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTD 435
Query: 467 EEDEA 471
EE+EA
Sbjct: 436 EEEEA 440
>gi|209977084 REST corepressor 3 isoform c [Homo sapiens]
Length = 449
Score = 504 bits (1298), Expect = e-143
Identities = 265/424 (62%), Positives = 326/424 (76%), Gaps = 20/424 (4%)
Query: 64 NGQNKSLAAAAPNGNSSSNS---WEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
NG KS A +G SS+N + E SG SSD+EH G MRVG +YQA +P+FDP
Sbjct: 19 NGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVG-MRVGAEYQARIPEFDPG-- 75
Query: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
A + ++DN GMLVWSP ++ +AKLDEYIAIAKEKHGYN+EQALGMLFWHKHNIEKSLA
Sbjct: 76 ATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLA 135
Query: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
DLPNFTPFPDEWTVEDKVLFEQAFSFHGK+FHRIQQMLPDK+IASLVK+YYSWKKTR++T
Sbjct: 136 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRT 195
Query: 241 SVMDRHARK--QKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVK---- 294
S+MDR ARK + + +S+D++EE + + D + D KE+KKE + V K
Sbjct: 196 SLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLG 255
Query: 295 -KEKHSTQAKN---RAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQ 350
+E S Q ++ R+K +PPKGM+L+QEDV AVS + AA T+LRQLDMEL+S+KRQ+Q
Sbjct: 256 RREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQ 315
Query: 351 NIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIG 410
N KQ NSALK+K++GGIE ++ PE QK NARWTTEEQLLAVQ +RKYG+DFQAI+DVIG
Sbjct: 316 NAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIG 375
Query: 411 NKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQ--KPVKSPDN--SIKMPE 466
NK+V QVKNFFVNYRRRFN++EVLQEWEAE G + +NG ++ + KS N S K +
Sbjct: 376 NKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTD 435
Query: 467 EEDE 470
EE+E
Sbjct: 436 EEEE 439
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 484 bits (1245), Expect = e-137
Identities = 248/384 (64%), Positives = 305/384 (79%), Gaps = 16/384 (4%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM 161
MRVG +YQA +P+FDP A + ++DN GMLVWSP ++ +AKLDEYIAIAKEKHGYN+
Sbjct: 1 MRVGAEYQARIPEFDPG--ATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNV 58
Query: 162 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDK 221
EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGK+FHRIQQMLPDK
Sbjct: 59 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDK 118
Query: 222 SIASLVKFYYSWKKTRTKTSVMDRHARK--QKREREESEDELEEANGNNPIDIEVDQNKE 279
+IASLVK+YYSWKKTR++TS+MDR ARK + + +S+D++EE + + D + D KE
Sbjct: 119 TIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKE 178
Query: 280 SKKEVPPTETVPQVK-----KEKHSTQAKN---RAKRKPPKGMFLSQEDVEAVSANATAA 331
+KKE + V K +E S Q ++ R+K +PPKGM+L+QEDV AVS + AA
Sbjct: 179 AKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAA 238
Query: 332 TTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLA 391
T+LRQLDMEL+S+KRQ+QN KQ NSALK+K++GGIE ++ PE QK NARWTTEEQLLA
Sbjct: 239 NTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLA 298
Query: 392 VQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSN 451
VQ +RKYG+DFQAI+DVIGNK+V QVKNFFVNYRRRFN++EVLQEWEAE G + +NG ++
Sbjct: 299 VQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDAS 358
Query: 452 Q--KPVKSPDN--SIKMPEEEDEA 471
+ KS N S K +EE+EA
Sbjct: 359 TLGEETKSASNVPSGKSTDEEEEA 382
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 427 bits (1098), Expect = e-119
Identities = 231/421 (54%), Positives = 290/421 (68%), Gaps = 22/421 (5%)
Query: 67 NKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGM-RVGPQYQAVVPDFDPAKLARRSQ 125
++S A PNG + S SS+EEH M RVG YQAV+P+ P AR S
Sbjct: 16 SRSRAKTVPNGG------QPHSEDDSSEEEHSHDSMIRVGTNYQAVIPECKPESPARYSN 69
Query: 126 ERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNF 185
++ GMLVWSPN +S+AKLD+YIA+AKEKHGYN+EQALGML WHKH++EKSLADL NF
Sbjct: 70 -KELKGMLVWSPNHCVSDAKLDKYIAMAKEKHGYNIEQALGMLLWHKHDVEKSLADLANF 128
Query: 186 TPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDR 245
TPFPDEWTVEDKVLFEQAF FHGK F RIQQMLPDK I SLVK+YYSWKKTR++TSVMDR
Sbjct: 129 TPFPDEWTVEDKVLFEQAFGFHGKCFQRIQQMLPDKLIPSLVKYYYSWKKTRSRTSVMDR 188
Query: 246 HARK-QKREREESEDELEEANG--NNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQA 302
AR+ R+ +E DELEE G + D +E P KKE +Q
Sbjct: 189 QARRLGGRKDKEDSDELEEGRGGVSEGEPDPADPKREPLPSRPLNARPGPGKKEVQVSQY 248
Query: 303 KN---RAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSAL 359
++ R +R+PPKGM+LS E + AVS + A LR LD +L+S+KRQ+Q++KQTNS+L
Sbjct: 249 RHHPLRTRRRPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSL 308
Query: 360 KEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
++ L+GGI+P R PE K N+RWTT+EQLLAVQAIR+YG+DF AI++VIGNK++ QVK
Sbjct: 309 RQALEGGIDPLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT 368
Query: 420 FFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMP----EEEDEAPVLD 475
FFV+YRRRFN++EVLQEWEA E+ P P++ +P EE+DE +
Sbjct: 369 FFVSYRRRFNLEEVLQEWEA----EQDGAPGAPVPMEEARRGAPLPAPALEEDDEVQITS 424
Query: 476 V 476
V
Sbjct: 425 V 425
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 409 bits (1051), Expect = e-114
Identities = 214/343 (62%), Positives = 263/343 (76%), Gaps = 16/343 (4%)
Query: 64 NGQNKSLAAAAPNGNSSSNS---WEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKL 120
NG KS A +G SS+N + E SG SSD+EH G MRVG +YQA +P+FDP
Sbjct: 19 NGSAKSPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVG-MRVGAEYQARIPEFDPG-- 75
Query: 121 ARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLA 180
A + ++DN GMLVWSP ++ +A+LDEYIAIAKEKHGYN+EQALGMLFWHKHNIEKSLA
Sbjct: 76 ATKYTDKDNGGMLVWSPYHSIPDARLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLA 135
Query: 181 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKT 240
DLPNFTPFPDEWTVEDKVLFEQAFSFHGK+FHRIQQMLPDK+IASLVK+YYSWKKTR++T
Sbjct: 136 DLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRT 195
Query: 241 SVMDRHARK--QKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVK---- 294
S+MDR ARK + + +S+D++EE + + D + D KE+KKE + V K
Sbjct: 196 SLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLG 255
Query: 295 -KEKHSTQAKN---RAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQ 350
+E S Q ++ R+K +PPKGM+L+QEDV AVS + AA T+LRQLDMEL+S+KRQ+Q
Sbjct: 256 RREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQ 315
Query: 351 NIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQ 393
N KQ NSALK+K++GGIE ++ PE QK NARWTTEEQLLAVQ
Sbjct: 316 NAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQ 358
>gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 116 bits (290), Expect = 5e-26
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 31/167 (18%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM 161
+RVG YQA++P+ P LAR S ++ G+LVWSPN +S+AKLD+YI +A EKHGYN+
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLK-GVLVWSPNHCVSDAKLDKYIVMATEKHGYNI 60
Query: 162 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDK 221
EQ LG+ + + L LP W IQQ LPDK
Sbjct: 61 EQTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDK 93
Query: 222 SIASLVKFYYSWKKTRTKTSVMDRHARKQK--REREESEDELEEANG 266
I+SLVK++YSWKKT ++TS+ DR AR+ + +++E+S DE EE+ G
Sbjct: 94 LISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDS-DEFEESRG 139
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 401 DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 440
DF AI++VIGNK++ QVK FFV+Y FN++EVLQEWEAE
Sbjct: 169 DFGAIAEVIGNKTLTQVKTFFVSYWHCFNLEEVLQEWEAE 208
>gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 116 bits (290), Expect = 5e-26
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 31/167 (18%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM 161
+RVG YQA++P+ P LAR S ++ G+LVWSPN +S+AKLD+YI +A EKHGYN+
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLK-GVLVWSPNHCVSDAKLDKYIVMATEKHGYNI 60
Query: 162 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDK 221
EQ LG+ + + L LP W IQQ LPDK
Sbjct: 61 EQTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDK 93
Query: 222 SIASLVKFYYSWKKTRTKTSVMDRHARKQK--REREESEDELEEANG 266
I+SLVK++YSWKKT ++TS+ DR AR+ + +++E+S DE EE+ G
Sbjct: 94 LISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDS-DEFEESRG 139
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 401 DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 440
DF AI++VIGNK++ QVK FFV+Y FN++EVLQEWEAE
Sbjct: 169 DFGAIAEVIGNKTLTQVKTFFVSYWHCFNLEEVLQEWEAE 208
>gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo
sapiens]
Length = 266
Score = 116 bits (290), Expect = 5e-26
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 31/167 (18%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM 161
+RVG YQA++P+ P LAR S ++ G+LVWSPN +S+AKLD+YI +A EKHGYN+
Sbjct: 2 VRVGTNYQAIIPECKPESLARYSNKKLK-GVLVWSPNHCVSDAKLDKYIVMATEKHGYNI 60
Query: 162 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDK 221
EQ LG+ + + L LP W IQQ LPDK
Sbjct: 61 EQTLGVDSRGQGAVGTGLW-LPR-----QVW---------------------IQQTLPDK 93
Query: 222 SIASLVKFYYSWKKTRTKTSVMDRHARKQK--REREESEDELEEANG 266
I+SLVK++YSWKKT ++TS+ DR AR+ + +++E+S DE EE+ G
Sbjct: 94 LISSLVKYHYSWKKTHSRTSMTDRQARRLRGCKDKEDS-DEFEESRG 139
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 401 DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 440
DF AI++VIGNK++ QVK FFV+Y FN++EVLQEWEAE
Sbjct: 169 DFGAIAEVIGNKTLTQVKTFFVSYWHCFNLEEVLQEWEAE 208
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 105 bits (262), Expect = 9e-23
Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 19/285 (6%)
Query: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQ- 250
W+ ++K F + F H K F I L K++A V +YY KK S++ R R++
Sbjct: 432 WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRRRG 491
Query: 251 -KREREESEDELEEANGNNPI---DIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRA 306
+++++ + + ++ P+ E KE +KE E P+V+ +K ++
Sbjct: 492 KSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDK-----EDLL 546
Query: 307 KRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGG 366
K K S ED + A A+ + R + N + A+ +
Sbjct: 547 KEKTDD---TSGEDNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSAE 603
Query: 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426
+ L E ++RWT EE A + + ++GR++ AI+ ++G+K+V Q KNF+ NY++
Sbjct: 604 LASMELNE-----SSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 658
Query: 427 RFNIDEVLQEWEAEHGKEETNGPSNQK-PVKSPDNSIKMPEEEDE 470
R N+DE+LQ+ + + KE +K P + + + P EDE
Sbjct: 659 RQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVEDE 703
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 105 bits (262), Expect = 9e-23
Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 19/285 (6%)
Query: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQ- 250
W+ ++K F + F H K F I L K++A V +YY KK S++ R R++
Sbjct: 432 WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRRRG 491
Query: 251 -KREREESEDELEEANGNNPI---DIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRA 306
+++++ + + ++ P+ E KE +KE E P+V+ +K ++
Sbjct: 492 KSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDK-----EDLL 546
Query: 307 KRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGG 366
K K S ED + A A+ + R + N + A+ +
Sbjct: 547 KEKTDD---TSGEDNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSAE 603
Query: 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426
+ L E ++RWT EE A + + ++GR++ AI+ ++G+K+V Q KNF+ NY++
Sbjct: 604 LASMELNE-----SSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 658
Query: 427 RFNIDEVLQEWEAEHGKEETNGPSNQK-PVKSPDNSIKMPEEEDE 470
R N+DE+LQ+ + + KE +K P + + + P EDE
Sbjct: 659 RQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVEDE 703
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 95.5 bits (236), Expect = 9e-20
Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 22/291 (7%)
Query: 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRH- 246
F + WT +K +F+ F H K F I L KS+ V +YY KK +++ R+
Sbjct: 436 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNY 495
Query: 247 ----ARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQA 302
R Q+ R E+++EE + E + +E KK+ + K EK ++
Sbjct: 496 GKRRGRNQQIARPSQEEKVEEKEEDKAEKTE--KKEEEKKD-------EEEKDEKEDSKE 546
Query: 303 KNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEK 362
+ K K ++E +A A + R+ S+ + +A E+
Sbjct: 547 NTKEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRITRSMTNEAAAASAAAAAATEE 606
Query: 363 LDGGIEPYRLPEVIQKCN-ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 421
+ P P + +RWT EE +A + + ++GR++ AI+ ++G KS Q KNF+
Sbjct: 607 PPPPLPPPPEPISTEPVETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFY 666
Query: 422 VNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPV---KSPDNSIKMPEEED 469
NY+RR N+D +LQ +H ++ + P ++ V +S +++ E+ED
Sbjct: 667 FNYKRRHNLDNLLQ----QHKQKTSRKPREERDVSQCESVASTVSAQEDED 713
Score = 49.3 bits (116), Expect = 8e-06
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQK 251
WT E+ + ++ HG+ + I +M+ KS A FY+++K+ +++ +H +K
Sbjct: 628 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTS 687
Query: 252 REREESEDELEEANGNNPIDIEVDQNKE--SKKEVPPTETVPQVKKEKHSTQ-AKNRAKR 308
R+ E D + + + + + D++ E +++E P V VK + S + A +R
Sbjct: 688 RKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEVEAVKPSEDSPENATSRGNT 747
Query: 309 KPPKGMFLSQEDVEAVSANATAATT 333
+P + + E + S + +T
Sbjct: 748 EPAVELEPTTETAPSTSPSLAVPST 772
Score = 30.4 bits (67), Expect = 3.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 10 GKRRGRNNAAASASAAAASAAASAACASP 38
G+R+GR + + AAAASAAA+AA P
Sbjct: 579 GRRKGRITRSMTNEAAAASAAAAAATEEP 607
>gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens]
Length = 515
Score = 77.8 bits (190), Expect = 2e-14
Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 45/199 (22%)
Query: 100 GGMRVGPQYQAVVPDFDPAKLARRSQERDN--LGMLVWSPNQNLSEAKLDEYIAIAKE-- 155
G +RVGP+YQA +P+ L S ER+ L + VW PN L++ ++D+++ +A+
Sbjct: 148 GEIRVGPRYQADIPEM---LLEGESDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARAVG 204
Query: 156 ------------------------KHGYNMEQALGMLFWHKHNIEKSLADL-PNFTPF-- 188
+ A+ L+ H +++ +++ L P P
Sbjct: 205 TFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAISVLVPLGGPVLC 264
Query: 189 ---PDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMD 244
+EW+ + LFE+A +GK F+ I+Q LP KS+ S++++YY WK T D
Sbjct: 265 RDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTT-------D 317
Query: 245 RHARKQKREREESEDELEE 263
R+ ++++ + E+E +L++
Sbjct: 318 RYVQQKRLKAAEAESKLKQ 336
Score = 32.7 bits (73), Expect = 0.75
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 383 WTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYRR--RFNIDEVLQEWEA 439
W+ E L +A+ KYG+DF I D + KS+ + ++ ++ R+ + L+ EA
Sbjct: 271 WSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEA 330
Query: 440 EHGKEETNGPSNQKP 454
E ++ P+ KP
Sbjct: 331 ESKLKQVYIPTYSKP 345
>gi|14141170 metastasis-associated protein 2 [Homo sapiens]
Length = 668
Score = 73.2 bits (178), Expect = 5e-13
Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 43/198 (21%)
Query: 100 GGMRVGPQYQAVVPD-FDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKE--- 155
G +RVG +YQA +PD + R+Q++ + M VW P+ L++ ++D+++ +A+
Sbjct: 145 GEIRVGCKYQAEIPDRLVEGESDNRNQQK--MEMKVWDPDNPLTDRQIDQFLVVARAVGT 202
Query: 156 -----------------------KHGYNMEQALGMLFWHKHNIEKSLADL-PNFTPF--- 188
+ A+ L + +++ K+++ L P P
Sbjct: 203 FARALDCSSSIRQPSLHMSAAAASRDITLFHAMDTLQRNGYDLAKAMSTLVPQGGPVLCR 262
Query: 189 --PDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMDR 245
+EW+ + +LFE+A +GK F+ I+Q LP KS+AS+V+FYY WK T DR
Sbjct: 263 DEMEEWSASEAMLFEEALEKYGKDFNDIRQDFLPWKSLASIVQFYYMWKTT-------DR 315
Query: 246 HARKQKREREESEDELEE 263
+ ++++ + E++ +L++
Sbjct: 316 YIQQKRLKAAEADSKLKQ 333
Score = 34.7 bits (78), Expect = 0.20
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 326 ANATAATTVLRQ--LDMELVSVKRQI-----QNIKQTNSALKEKLDGGIEPYRLPEVIQK 378
A A ++ +RQ L M + R I + Q N K + P P + +
Sbjct: 204 ARALDCSSSIRQPSLHMSAAAASRDITLFHAMDTLQRNGYDLAKAMSTLVPQGGPVLCRD 263
Query: 379 CNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYRR--RFNIDEVLQ 435
W+ E +L +A+ KYG+DF I D + KS+ + F+ ++ R+ + L+
Sbjct: 264 EMEEWSASEAMLFEEALEKYGKDFNDIRQDFLPWKSLASIVQFYYMWKTTDRYIQQKRLK 323
Query: 436 EWEAEHGKEETNGPSNQKP 454
EA+ ++ P+ KP
Sbjct: 324 AAEADSKLKQVYIPTYTKP 342
>gi|115527080 metastasis associated protein [Homo sapiens]
Length = 715
Score = 66.6 bits (161), Expect = 5e-11
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 46/217 (21%)
Query: 100 GGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKE---- 155
G +RVG +YQA + D + +++ L VW + L++ ++D+++ +A+
Sbjct: 165 GEIRVGNRYQADITDL-LKEGEEDGRDQSRLETQVWEAHNPLTDKQIDQFLVVARSVGTF 223
Query: 156 ----------------------KHGYNMEQALGMLFWHKHNIEKSLADL-PNFTPF---- 188
+ A+ L + ++I K+++ L P P
Sbjct: 224 ARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLHKNIYDISKAISALVPQGGPVLCRD 283
Query: 189 -PDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMDRH 246
+EW+ + LFE+A +GK F IQQ LP KS+ S++++YY WK T DR+
Sbjct: 284 EMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTT-------DRY 336
Query: 247 ARKQKREREESEDELEEA-----NGNNPIDIEVDQNK 278
++++ + E+E +L++ N NP I V+ K
Sbjct: 337 VQQKRLKAAEAESKLKQVYIPNYNKPNPNQISVNNVK 373
Score = 33.1 bits (74), Expect = 0.58
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 318 QEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 377
Q + +A A+ T+ +D ++ + I +I + SAL + GG P + +
Sbjct: 235 QPSLHMSAAAASRDITLFHAMD----TLHKNIYDISKAISALVPQ--GG------PVLCR 282
Query: 378 KCNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYRR--RFNIDEVL 434
W+ E L +A+ KYG+DF I D + KS+ + ++ ++ R+ + L
Sbjct: 283 DEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRL 342
Query: 435 QEWEAEHGKEETNGPSNQKP 454
+ EAE ++ P+ KP
Sbjct: 343 KAAEAESKLKQVYIPNYNKP 362
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 65.1 bits (157), Expect = 1e-10
Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 102 MRVGPQYQAVVPDF-DPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYI--------AI 152
+ +G ++QA +P+ D + LA+ + + LVW P L L + + +
Sbjct: 781 INIGLRFQAEIPELQDISALAQDTHK----ATLVWKPWPELENHDLQQRVENLLNLCCSS 836
Query: 153 AKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPF--------------PDEWTVEDKV 198
A G N E AL LF K ++ +L L P D+WT ++
Sbjct: 837 ALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERK 896
Query: 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKRE----- 253
LF +A + + K F +Q+M+ K++A V++YY+WKK + R R + E
Sbjct: 897 LFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMR----LGRKHRTRLAEIIDDC 952
Query: 254 -REESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQV 293
E E+ELEE +P + + KE + EVP + P V
Sbjct: 953 VTSEEEEELEEEEEEDP-EEDRKSTKEEESEVPKSPEPPPV 992
Score = 38.1 bits (87), Expect = 0.018
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI----------- 430
+WT+ E+ L +A+ Y +DF + ++ +K+V Q ++ +++ +
Sbjct: 889 KWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEI 948
Query: 431 --DEVLQEWEAEHGKEETNGP-SNQKPVKSPDNSIKMPEEEDEAPVL 474
D V E E E +EE P ++K K ++ + E PVL
Sbjct: 949 IDDCVTSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPEPPPVPVL 995
>gi|45267839 mesoderm induction early response 1, family member 2
[Homo sapiens]
Length = 545
Score = 62.8 bits (151), Expect = 7e-10
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 32/231 (13%)
Query: 62 PNNGQNKSLAAA--APNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAK 119
PN ++ LA P ++SS++ E+ + +E + VGPQ+QA D
Sbjct: 160 PNRSGSRFLADEDREPGSSASSDTEEDSLPANKCKKE-----IMVGPQFQA---DLSNLH 211
Query: 120 LARRSQE-RDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM--------------EQA 164
L R ++ +N L+W P+ L E +++E++ A ++ + M EQA
Sbjct: 212 LNRHCEKIYENEDQLLWDPSV-LPEREVEEFLYRAVKRRWHEMAGPQLPEGEAVKDSEQA 270
Query: 165 LGMLFWHKHNIEKSLADLP-NFTPFPD---EWTVEDKVLFEQAFSFHGKTFHRIQ-QMLP 219
L L N+E++L L N D W+ E+ FE F HGK FH IQ +
Sbjct: 271 LYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVR 330
Query: 220 DKSIASLVKFYYSWKKT-RTKTSVMDRHARKQKREREESEDELEEANGNNP 269
+S+ V++YY WKK+ R ++K + D ++ +G++P
Sbjct: 331 TRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKYVPSGTTDADQDLDGSDP 381
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 60.8 bits (146), Expect = 3e-09
Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 30/187 (16%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNL-----SEAKLDEYIAIAKEK 156
+ +G ++QA +P+ LA + ++ LVW P ++ ++ ++ E +A
Sbjct: 1074 INIGSRFQAEIPELQERSLAGTDE---HVASLVWKPWGDMMISSETQDRVTELCNVACSS 1130
Query: 157 ----HGYNMEQALGMLFWHKHNIEKSLADLPNFTPFP--------------DEWTVEDKV 198
G N+E AL L + N++ +L L P D WT +K
Sbjct: 1131 VMPGGGTNLELALHCLHEAQGNVQVALETLLLRGPHKPRTHLLADYRYTGSDVWTPIEKR 1190
Query: 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRT----KTSVMDRHARKQKRER 254
LF++AF H K F+ I +M+ K++A V++YY WKK + +++ +++ E
Sbjct: 1191 LFKKAFYAHKKDFYLIHKMIQTKTVAQCVEYYYIWKKMIKFDCGRAPGLEKRVKREPEEV 1250
Query: 255 EESEDEL 261
E +E+++
Sbjct: 1251 ERTEEKV 1257
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 57.4 bits (137), Expect = 3e-08
Identities = 32/103 (31%), Positives = 71/103 (68%), Gaps = 4/103 (3%)
Query: 14 GRNNAAAS---ASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSL 70
GRN +AAS AS A++S+++S++ +S +++++S +++SS+S++++S++++ ++ + S
Sbjct: 2599 GRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2658
Query: 71 AAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVP 113
++++ + +SSS+S + S SSD+E GP QA +P
Sbjct: 2659 SSSSSSSSSSSSSTTDEDSSCSSDDE-AAPAPTAGPSAQAALP 2700
Score = 39.7 bits (91), Expect = 0.006
Identities = 20/105 (19%), Positives = 57/105 (54%)
Query: 9 SGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNK 68
S +++++S+S++++S+++S++ +S +++++S +++SS+S+ ++ ++ +
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA 2686
Query: 69 SLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVP 113
A P+ ++ + +G + H G PQ QA P
Sbjct: 2687 PAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPP 2731
Score = 38.1 bits (87), Expect = 0.018
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 19/107 (17%)
Query: 6 PEVSGKRRGRNNAAASASAAAASAAASAACASPAATAAS-------------------GA 46
P+ K + + A + ++++S++ S++ +S ++++ S G
Sbjct: 2541 PKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGR 2600
Query: 47 AASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSS 93
S+AS+ AAS A++ ++ + S ++++ + +SSS+S SS SSS
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 37.4 bits (85), Expect = 0.031
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 5 GPEVSGKRRGRNNAAASASAAAAS-AAASAACASPAATAASGAAASSASAAAASAAAAPN 63
G E G+ G N + +AAS+ ASPA++++S +++SS+S++++S+++
Sbjct: 2578 GSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSS--- 2634
Query: 64 NGQNKSLAAAAPNGNSSSNSWEEGSSGSSS 93
SSS+S SS SSS
Sbjct: 2635 ---------------SSSSSSSSSSSSSSS 2649
Score = 33.5 bits (75), Expect = 0.44
Identities = 19/91 (20%), Positives = 45/91 (49%)
Query: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAP 62
+ G E S ++ ++S+S++++S+ + G + +A+++ A
Sbjct: 2551 QDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAA 2610
Query: 63 NNGQNKSLAAAAPNGNSSSNSWEEGSSGSSS 93
+ + S ++++ + +SSS+S SS SSS
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSS 2641
Score = 31.2 bits (69), Expect = 2.2
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 29 AAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGS 88
A S A P T AA + A++ P + A + +SS S+++
Sbjct: 1766 AKNSKAAGGPKLTKRGLAAPRTLKPKPATSRKQPFCLLLREAEARSSFSDSSEESFDQDE 1825
Query: 89 SGSSSDEEH--------GGGGMRVGPQYQAVVPDFDPAKL 120
S DEE GGG R+G + +A+ P + + L
Sbjct: 1826 SSEEEDEEEELEEEDEASGGGYRLGARERALSPGLEESGL 1865
Score = 29.3 bits (64), Expect = 8.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 29 AAASAACASPAATAASGAAAS----------SASAAAASAAAAPNNGQNKSLAAAAPNGN 78
AA S+ +P A G A S + + A A +G +S ++++ +
Sbjct: 2507 AAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSG 2566
Query: 79 SSSNSWEEGSSGSSSD-----EEHGGGGMRVG 105
SSS+S SSGS ++ +++G GG G
Sbjct: 2567 SSSSSSSSSSSGSETEGEEEGDKNGDGGCGTG 2598
>gi|94721313 mesoderm induction early response 1, family member 3
[Homo sapiens]
Length = 549
Score = 57.0 bits (136), Expect = 4e-08
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 85 EEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEA 144
E+ + S + E + +G QYQA +P + + + +N L+W P+ L E+
Sbjct: 159 EDVETDSGNSPEDLRKEIMIGLQYQAEIPPY-LGEYDGNEKVYENEDQLLWCPDVVL-ES 216
Query: 145 KLDEYIA--------------IAKEKHGYNMEQALGMLFWHKHNIEKSLADL---PNFTP 187
K+ EY+ I+ H + EQAL L HNI++++ +
Sbjct: 217 KVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKASQ 276
Query: 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKT 236
WT E+ FE A GK FH IQ+ + +++A V FYY WKK+
Sbjct: 277 GMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKS 326
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 57.0 bits (136), Expect = 4e-08
Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 41/245 (16%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAK-----LDEYIAIAKEK 156
+ VG ++QA +P LA + +L VW P ++L ++ +++ + A
Sbjct: 723 INVGSRFQAEIPLMRDRALAAADPHKADL---VWQPWEDLESSREKQRQVEDLLTAACSS 779
Query: 157 ----HGYNMEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKV 198
G N E AL L + +I ++L L P+ P D+W + ++
Sbjct: 780 IFPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERK 839
Query: 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT----RTKTSVM-DRHARKQKRE 253
LF + + + K F +Q+++ K++A V+FYY++KK R T D +K
Sbjct: 840 LFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSA 899
Query: 254 REESEDELEEANGNNPIDI-----EVDQNKESKKEVPP-----TETVPQVKKEKHSTQAK 303
+EE E +++ + + + ++ E K+EV E VP++++++ + +
Sbjct: 900 QEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGR 959
Query: 304 NRAKR 308
R++R
Sbjct: 960 ERSRR 964
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI--DEVLQEWEA 439
+W E+ L + I Y +DF + +I K+V Q F+ Y+++ I + L +
Sbjct: 832 QWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDV 891
Query: 440 EHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP 472
+ E++ + +K+ ++P E+P
Sbjct: 892 DTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESP 924
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 57.0 bits (136), Expect = 4e-08
Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 41/245 (16%)
Query: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAK-----LDEYIAIAKEK 156
+ VG ++QA +P LA + +L VW P ++L ++ +++ + A
Sbjct: 723 INVGSRFQAEIPLMRDRALAAADPHKADL---VWQPWEDLESSREKQRQVEDLLTAACSS 779
Query: 157 ----HGYNMEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKV 198
G N E AL L + +I ++L L P+ P D+W + ++
Sbjct: 780 IFPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERK 839
Query: 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT----RTKTSVM-DRHARKQKRE 253
LF + + + K F +Q+++ K++A V+FYY++KK R T D +K
Sbjct: 840 LFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSA 899
Query: 254 REESEDELEEANGNNPIDI-----EVDQNKESKKEVPP-----TETVPQVKKEKHSTQAK 303
+EE E +++ + + + ++ E K+EV E VP++++++ + +
Sbjct: 900 QEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGR 959
Query: 304 NRAKR 308
R++R
Sbjct: 960 ERSRR 964
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI--DEVLQEWEA 439
+W E+ L + I Y +DF + +I K+V Q F+ Y+++ I + L +
Sbjct: 832 QWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDV 891
Query: 440 EHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP 472
+ E++ + +K+ ++P E+P
Sbjct: 892 DTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESP 924
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 53.9 bits (128), Expect = 3e-07
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 8 VSGKRR--GRNNAAASASAAAASAAA----SAACASPAATAASGAAASSASAAAASAAAA 61
VSG R G ++AAA+A+AAAA+AAA S +C ++A +SSA+AAAA+AAAA
Sbjct: 74 VSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAA 133
Query: 62 PNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGG 101
A+++P N S G SG S GGGG
Sbjct: 134 ---------ASSSPFANDYSVFQAPGVSGGSGGGGGGGGG 164
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 53.9 bits (128), Expect = 3e-07
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 8 VSGKRR--GRNNAAASASAAAASAAA----SAACASPAATAASGAAASSASAAAASAAAA 61
VSG R G ++AAA+A+AAAA+AAA S +C ++A +SSA+AAAA+AAAA
Sbjct: 56 VSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAA 115
Query: 62 PNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGG 101
A+++P N S G SG S GGGG
Sbjct: 116 ---------ASSSPFANDYSVFQAPGVSGGSGGGGGGGGG 146
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 100 GGMRVGPQYQAVVPDFDPAKLARRSQERDNLGM---LVWSPNQNLSEAKLDEYIAIAKEK 156
G +RVGP +QA +PD P S + D + LVW P N + L Y+ A+
Sbjct: 284 GEIRVGPSHQAKLPDLQPFP----SPDGDTVTQHEELVWMPGVN--DCDLLMYLRAARSM 337
Query: 157 HGY--------------------NMEQALGMLFWHKHNIEKSLADLPNFTPFPDE----W 192
+ AL L ++ K+L L P P W
Sbjct: 338 AAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLVK-KPVPKLIEKCW 396
Query: 193 TVEDKVLFEQAFSFHGKTFHRI-QQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQK 251
T ++ F + +GK F RI +++LP+K L+ FYY WKKT S R R+ +
Sbjct: 397 TEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAAS--SRAHRRHR 454
Query: 252 RE 253
R+
Sbjct: 455 RQ 456
Score = 35.0 bits (79), Expect = 0.15
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 343 VSVKRQIQNIKQTNSALKEKLDGGIEPYRL-----PEVIQKCNARWTTEEQLLAVQAIRK 397
V+ R + N+ + D G RL P++I+KC WT +E V+ +R+
Sbjct: 354 VAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIEKC---WTEDEVKRFVKGLRQ 410
Query: 398 YGRDFQAI-SDVIGNKSVVQVKNFFVNYRR 426
YG++F I +++ NK ++ F+ +++
Sbjct: 411 YGKNFFRIRKELLPNKETGELITFYYYWKK 440
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 100 GGMRVGPQYQAVVPDFDPAKLARRSQERDNLGM---LVWSPNQNLSEAKLDEYIAIAKEK 156
G +RVGP +QA +PD P S + D + LVW P N + L Y+ A+
Sbjct: 284 GEIRVGPSHQAKLPDLQPFP----SPDGDTVTQHEELVWMPGVN--DCDLLMYLRAARSM 337
Query: 157 HGY--------------------NMEQALGMLFWHKHNIEKSLADLPNFTPFPDE----W 192
+ AL L ++ K+L L P P W
Sbjct: 338 AAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLVK-KPVPKLIEKCW 396
Query: 193 TVEDKVLFEQAFSFHGKTFHRI-QQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQK 251
T ++ F + +GK F RI +++LP+K L+ FYY WKKT S R R+ +
Sbjct: 397 TEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAAS--SRAHRRHR 454
Query: 252 RE 253
R+
Sbjct: 455 RQ 456
Score = 35.0 bits (79), Expect = 0.15
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 343 VSVKRQIQNIKQTNSALKEKLDGGIEPYRL-----PEVIQKCNARWTTEEQLLAVQAIRK 397
V+ R + N+ + D G RL P++I+KC WT +E V+ +R+
Sbjct: 354 VAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIEKC---WTEDEVKRFVKGLRQ 410
Query: 398 YGRDFQAI-SDVIGNKSVVQVKNFFVNYRR 426
YG++F I +++ NK ++ F+ +++
Sbjct: 411 YGKNFFRIRKELLPNKETGELITFYYYWKK 440
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 50.8 bits (120), Expect = 3e-06
Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 46/267 (17%)
Query: 104 VGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYI------------- 150
VG +QA +P + + +N L+W P + L E K+ ++
Sbjct: 201 VGSMFQAEIP-VGICRYKENEKVYENDDQLLWDP-EYLPEDKVIIFLKDASRRTGDEKGV 258
Query: 151 -AIAKEKHGYNMEQALGMLFWHKHNIEKSLADLP-NFTPFPDE---WTVEDKVLFEQAFS 205
AI + H + EQAL L + E++L L N +E WT E+ FEQ
Sbjct: 259 EAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLK 318
Query: 206 FHGKTFHRIQ-QMLPDKSIASLVKFYYSWKKTRTKT--SVMDRHARKQ-----------K 251
+GK FH IQ + +S+ V FYY WKK+ + R +K+
Sbjct: 319 AYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMD 378
Query: 252 REREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPP 311
R +ESE + P N +S+KE TV ST +N P
Sbjct: 379 RLLDESESAASSRAPSPPPTASNSSNSQSEKE---DGTV--------STANQNGVSSNGP 427
Query: 312 KGMFLSQEDVEAVSANATAATTVLRQL 338
G L++E+V+ + T +L+ L
Sbjct: 428 -GEILNKEEVKVEGLHINGPTGILQML 453
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 49.7 bits (117), Expect = 6e-06
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 18 AAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNG 77
AAA+A+AAAA+AAA+AA +PA AA+ A ++A+A A +AAAAP + A AA
Sbjct: 500 AAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPA 559
Query: 78 NSSS 81
++S
Sbjct: 560 AAAS 563
Score = 48.5 bits (114), Expect = 1e-05
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 18 AAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNG 77
AAA+A+AAAA+AAA+A + AA AA AA++A A AA+AA AP ++AAA
Sbjct: 502 AAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAA 561
Query: 78 NSSSNSWEEGSS 89
S++ S + S
Sbjct: 562 ASAAPSHSQKPS 573
Score = 46.6 bits (109), Expect = 5e-05
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 6 PEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNG 65
P+ +G R +AA+A AAAA+AAA+AA A+ AA A AA++A A AA+AA A
Sbjct: 482 PQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA---- 537
Query: 66 QNKSLAAAAP 75
AAAAP
Sbjct: 538 ---LAAAAAP 544
Score = 42.7 bits (99), Expect = 7e-04
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 14/67 (20%)
Query: 18 AAASASAAAASAAASAACASPAATAASG--------------AAASSASAAAASAAAAPN 63
AAA+A+AAAA A A AA A+PA AA+ AA + A+A AA+A+AAP+
Sbjct: 508 AAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPS 567
Query: 64 NGQNKSL 70
+ Q S+
Sbjct: 568 HSQKPSV 574
Score = 37.4 bits (85), Expect = 0.031
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 6 PEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAA----AASAAAA 61
P SGK N+ + + SAA A AA AA+ AAA++A+AA A +AAAA
Sbjct: 468 PSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAA 527
Query: 62 PNNGQNKSLAAAA 74
P +LAAAA
Sbjct: 528 P------ALAAAA 534
Score = 36.2 bits (82), Expect = 0.068
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 18 AAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAP 75
AAA+A A AA+AA + A A+ A AA+ AAA+SA+ + + + P ++ AA P
Sbjct: 531 AAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASRPCPAAQP 588
Score = 31.2 bits (69), Expect = 2.2
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAP 62
EK P + + +S ++ A S +A AA AAA++A+AAAA+AAAA
Sbjct: 458 EKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAA- 516
Query: 63 NNGQNKSLAAAA 74
+LAAAA
Sbjct: 517 --APAPALAAAA 526
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 48.9 bits (115), Expect = 1e-05
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 24 AAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNS 83
A AA +A ASPA + SG A A A A A + P+ Q + + P+G S
Sbjct: 345 APAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRP-PSVQPSGGGGGGS 403
Query: 84 WEEGSSGSSSDEEHGGGGMRVG-PQYQAVVPDFDPAKLARRSQERDNLGMLVWSP 137
GSS SS+ GG G + G Y +VV D PA++A S +N P
Sbjct: 404 GGGGSSSSSNSSAGGGAGKQNGATSYSSVVAD-SPAEVALSSSGGNNASSQALGP 457
Score = 34.3 bits (77), Expect = 0.26
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 9 SGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNN---G 65
+G G+ N A S S+ A SPA A S + ++AS+ A + P+N
Sbjct: 416 AGGGAGKQNGATSYSSVVAD--------SPAEVALSSSGGNNASSQALGPPSGPHNPPPS 467
Query: 66 QNKSLAAAAPNGNSSSNSWEEGSSGSSS 93
+K +AAAP G +SG S
Sbjct: 468 TSKEPSAAAPTGAGGVAPGSGNNSGGPS 495
>gi|225735619 mesoderm induction early response 1 isoform i [Homo
sapiens]
Length = 370
Score = 48.1 bits (113), Expect = 2e-05
Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 34/221 (15%)
Query: 104 VGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYI------------- 150
VG +QA +P + + +N L+W P + L E K+ ++
Sbjct: 121 VGSMFQAEIP-VGICRYKENEKVYENDDQLLWDP-EYLPEDKVIIFLKDASRRTGDEKGV 178
Query: 151 -AIAKEKHGYNMEQALGMLFWHKHNIEKSLADLP-NFTPFPDE---WTVEDKVLFEQAFS 205
AI + H + EQAL L + E++L L N +E WT E+ FEQ
Sbjct: 179 EAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLK 238
Query: 206 FHGKTFHRIQ-QMLPDKSIASLVKFYYSWKKTRTKT--SVMDRHARKQ-----------K 251
+GK FH IQ + +S+ V FYY WKK+ + R +K+
Sbjct: 239 AYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMD 298
Query: 252 REREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQ 292
R +ESE + P N +S+KE T Q
Sbjct: 299 RLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTVSTANQ 339
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.123 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,557,687
Number of Sequences: 37866
Number of extensions: 855563
Number of successful extensions: 16002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 434
Number of HSP's that attempted gapping in prelim test: 8986
Number of HSP's gapped (non-prelim): 4626
length of query: 482
length of database: 18,247,518
effective HSP length: 106
effective length of query: 376
effective length of database: 14,233,722
effective search space: 5351879472
effective search space used: 5351879472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.