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Search of human proteins with 7661586
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661586 TBC1 domain family, member 29 [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661586 TBC1 domain family, member 29 [Homo sapiens] 304 2e-83
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 84 6e-17
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 84 6e-17
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 84 6e-17
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 84 6e-17
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 84 6e-17
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 83 8e-17
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 83 8e-17
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 83 8e-17
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 79 1e-15
gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 59 1e-09
gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 59 1e-09
gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 59 1e-09
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 35 0.018
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 35 0.018
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.031
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.069
gi|169214018 PREDICTED: hypothetical protein [Homo sapiens] 31 0.45
gi|169214396 PREDICTED: hypothetical protein [Homo sapiens] 31 0.45
gi|169213318 PREDICTED: hypothetical protein [Homo sapiens] 31 0.45
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 29 1.3
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 29 1.3
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 29 1.3
gi|239753437 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|239748002 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|239741900 PREDICTED: hypothetical protein XP_002342343 [Homo ... 29 1.3
gi|6912736 transient receptor potential cation channel, subfamil... 29 1.3
gi|225543099 platelet-activating factor acetylhydrolase, isoform... 29 1.3
gi|225543097 platelet-activating factor acetylhydrolase, isoform... 29 1.3
gi|4505587 platelet-activating factor acetylhydrolase, isoform I... 29 1.3
>gi|7661586 TBC1 domain family, member 29 [Homo sapiens]
Length = 150
Score = 304 bits (778), Expect = 2e-83
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS
Sbjct: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
Query: 61 LYEETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQ 120
LYEETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQ
Sbjct: 61 LYEETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQ 120
Query: 121 ALSRGDKGISVSLSLPSLPSRRGRCGRIIG 150
ALSRGDKGISVSLSLPSLPSRRGRCGRIIG
Sbjct: 121 ALSRGDKGISVSLSLPSLPSRRGRCGRIIG 150
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 83.6 bits (205), Expect = 6e-17
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALTASES--------SRGPSLL 110
+T++ W R + R + + L +S++ LT + +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 83.6 bits (205), Expect = 6e-17
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALTASES--------SRGPSLL 110
+T++ W R + R + + L +S++ LT + +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 83.6 bits (205), Expect = 6e-17
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALTASES--------SRGPSLL 110
+T++ W R + R + + L +S++ LT + +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 83.6 bits (205), Expect = 6e-17
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALTASES--------SRGPSLL 110
+T++ W R + R + + L +S++ LT + +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 83.6 bits (205), Expect = 6e-17
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALTASES--------SRGPSLL 110
+T++ W R + R + + L +S++ LT + +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 83.2 bits (204), Expect = 8e-17
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALT--------ASESSRGPSLL 110
+T++ W R + R + + L +S++ LT ++ +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 83.2 bits (204), Expect = 8e-17
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALT--------ASESSRGPSLL 110
+T++ W R + R + + L +S++ LT ++ +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 83.2 bits (204), Expect = 8e-17
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
MGH DK+ LC Q S L+R+L DGISLGLT LWD+YL+EGEQ LM IT IAFKVQ+
Sbjct: 251 MGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQK 310
Query: 61 LYEETNK-ETWGPATPRALKGTGRAR-PICESLHSSLQALT--------ASESSRGPSLL 110
+T++ W R + R + + L +S++ LT ++ +G S
Sbjct: 311 RLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSAS 370
Query: 111 QTPPRVPGQQALSRGDK 127
+ P G + L +GD+
Sbjct: 371 RPVPASRGGKTLCKGDR 387
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 79.3 bits (194), Expect = 1e-15
Identities = 57/146 (39%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
M H DKEGLC Q +S LLR L DGISLGLT LWD+YL+EGEQ+LM ITSIA KVQ+
Sbjct: 250 MWHQDKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPITSIALKVQQK 309
Query: 61 LYEETNK------------ETWG-----------PATPRALKGTGRARPICESLHSSLQA 97
+T++ +TW +T + + G P + SL
Sbjct: 310 RLMKTSRCGLWARLRNQFFDTWAMNDDTVLKHLRASTKKLTRKQGDLPPPAKREQGSLAP 369
Query: 98 LTASESSRGPSLL----QTPPRVPGQ 119
S G +L Q PP P Q
Sbjct: 370 RPVPASRGGKTLCKGYRQAPPGPPAQ 395
>gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 59.3 bits (142), Expect = 1e-09
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
M L KEGLC +GS + LL+ DG S GLT LWD+ +LEGEQ+L + +FK+ R
Sbjct: 113 MRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHR- 171
Query: 61 LYEETNKETW 70
E K +W
Sbjct: 172 --EHLMKLSW 179
>gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 617
Score = 59.3 bits (142), Expect = 1e-09
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
M L KEGLC +GS + LL+ DG S GLT LWD+ +LEGEQ+L + +FK+ R
Sbjct: 243 MRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHR- 301
Query: 61 LYEETNKETW 70
E K +W
Sbjct: 302 --EHLMKLSW 309
>gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 59.3 bits (142), Expect = 1e-09
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MGHLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQRS 60
M L KEGLC +GS + LL+ DG S GLT LWD+ +LEGEQ+L + +FK+ R
Sbjct: 113 MRQLGKEGLCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKIHR- 171
Query: 61 LYEETNKETW 70
E K +W
Sbjct: 172 --EHLMKLSW 179
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 35.4 bits (80), Expect = 0.018
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 3 HLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQR 59
HLD + + T + W + D L +WD+Y+ EGE++L ++ K+ +
Sbjct: 252 HLDSQEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSYTILKLHK 308
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 35.4 bits (80), Expect = 0.018
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 3 HLDKEGLCTQGSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQMLMLITSIAFKVQR 59
HLD + + T + W + D L +WD+Y+ EGE++L ++ K+ +
Sbjct: 269 HLDSQEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSYTILKLHK 325
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.7 bits (78), Expect = 0.031
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 65 TNKETW-----GPATPRALKGT-GRARPICESLHSSLQALTASESSRGPSLLQTPPRVPG 118
+N ET+ GP P KG G P L + S SS LQ PP PG
Sbjct: 898 SNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPG 957
Query: 119 QQALS--RGDKGISVSLSLPSLPSRRG 143
Q +GD G+ +L +PS PS G
Sbjct: 958 PQGPKGDKGDPGVPGALGIPSGPSEGG 984
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.5 bits (75), Expect = 0.069
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 59 RSLYEETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPG 118
+++ ++T GP P L TGR P+ H L+ +E +GP LQ P PG
Sbjct: 467 QAVLQQTQLSMKGPPGPVGL--TGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPG 524
Query: 119 Q-----------------QALSRGDKGISVSLSLPSLPSRRGRCG 146
+ +GD+G LP LP +G+ G
Sbjct: 525 RVGKMGRPGADGARGLPGDTGPKGDRGFD---GLPGLPGEKGQRG 566
>gi|169214018 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.8 bits (68), Expect = 0.45
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 63 EETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRG------PSLLQTPPRV 116
E+ ++ GP R ++G + +++ SSLQ + RG P PP +
Sbjct: 51 EDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTL 110
Query: 117 ----PGQQALSRGDKGISVSLSLPS 137
QQ G + +SV+ SLPS
Sbjct: 111 GFFDVRQQTAITGKRNVSVAPSLPS 135
>gi|169214396 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.8 bits (68), Expect = 0.45
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 63 EETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRG------PSLLQTPPRV 116
E+ ++ GP R ++G + +++ SSLQ + RG P PP +
Sbjct: 51 EDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTL 110
Query: 117 ----PGQQALSRGDKGISVSLSLPS 137
QQ G + +SV+ SLPS
Sbjct: 111 GFFDVRQQTAITGKRNVSVAPSLPS 135
>gi|169213318 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.8 bits (68), Expect = 0.45
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 63 EETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRG------PSLLQTPPRV 116
E+ ++ GP R ++G + +++ SSLQ + RG P PP +
Sbjct: 51 EDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTL 110
Query: 117 ----PGQQALSRGDKGISVSLSLPS 137
QQ G + +SV+ SLPS
Sbjct: 111 GFFDVRQQTAITGKRNVSVAPSLPS 135
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 29.3 bits (64), Expect = 1.3
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 71 GPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQALSRGDKGIS 130
GP P L TGR P+ S + + +GP +Q PP G+ RG G
Sbjct: 541 GPPGPMGL--TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGAD 597
Query: 131 VSLSLPSLPSRRGRCG 146
+P P +G G
Sbjct: 598 GGRGMPGEPGAKGDRG 613
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 29.3 bits (64), Expect = 1.3
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 71 GPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQALSRGDKGIS 130
GP P L TGR P+ S + + +GP +Q PP G+ RG G
Sbjct: 490 GPPGPMGL--TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGAD 546
Query: 131 VSLSLPSLPSRRGRCG 146
+P P +G G
Sbjct: 547 GGRGMPGEPGAKGDRG 562
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 29.3 bits (64), Expect = 1.3
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 71 GPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQALSRGDKGIS 130
GP P L TGR P+ S + + +GP +Q PP G+ RG G
Sbjct: 529 GPPGPMGL--TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGAD 585
Query: 131 VSLSLPSLPSRRGRCG 146
+P P +G G
Sbjct: 586 GGRGMPGEPGAKGDRG 601
>gi|239753437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 13 GSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQ 45
G+SF+W L + +S G P LW +LL Q
Sbjct: 17 GASFTWALSLRGTALSPGELPALWHHHLLVQSQ 49
>gi|239748002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 13 GSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQ 45
G+SF+W L + +S G P LW +LL Q
Sbjct: 17 GASFTWALSLRGTALSPGELPALWHHHLLVQSQ 49
>gi|239741900 PREDICTED: hypothetical protein XP_002342343 [Homo
sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 13 GSSFSWLLRVLNDGISLGLTPCLWDMYLLEGEQ 45
G+SF+W L + +S G P LW +LL Q
Sbjct: 17 GASFTWALSLRGTALSPGELPALWHHHLLVQSQ 49
>gi|6912736 transient receptor potential cation channel, subfamily
C, member 5 [Homo sapiens]
Length = 973
Score = 29.3 bits (64), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 80 GTGRARPICESLHSSLQALTASESSRGPSLLQTPPRVPGQQALSRGDKGISVSLSLPSL 138
G+G AR +S+ +L ++ GP L++T PR G Q S+ + S PSL
Sbjct: 786 GSGGARAKSKSVSFNLGC--KKKTCHGPPLIRTMPRSSGAQGKSKAESSSKRSFMGPSL 842
>gi|225543099 platelet-activating factor acetylhydrolase, isoform
Ib, gamma subunit [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 86 PICESLHSSLQALTASESSRGPSLLQTPP 114
P+C +LHS L L A + +G LL+ P
Sbjct: 203 PVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
>gi|225543097 platelet-activating factor acetylhydrolase, isoform
Ib, gamma subunit [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 86 PICESLHSSLQALTASESSRGPSLLQTPP 114
P+C +LHS L L A + +G LL+ P
Sbjct: 203 PVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
>gi|4505587 platelet-activating factor acetylhydrolase, isoform Ib,
gamma subunit [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 86 PICESLHSSLQALTASESSRGPSLLQTPP 114
P+C +LHS L L A + +G LL+ P
Sbjct: 203 PVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,318,903
Number of Sequences: 37866
Number of extensions: 268837
Number of successful extensions: 1198
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 112
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.