Guide to the Human Genome
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Name: PAFAH1B3 Sequence: fasta or formatted (231aa) NCBI GI: 225543099
Description:

platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit

Referenced in:

Lipid Metabolism

Other entries for this name:
alt mRNA [231aa] platelet-activating factor acetylhydrolase, isoform Ib, gamma sub...
alt mRNA [231aa] platelet-activating factor acetylhydrolase, isoform Ib, gamma sub...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         15           2
 C cysteine            0.9          2           1
 D aspartate           5.2         12           1
 E glutamate           6.1         14           2
 F phenylalanine       2.6          6           1
 G glycine             9.1         21           2
 H histidine           6.9         16           2
 I isoleucine          3.5          8           1
 K lysine              2.6          6           1
 L leucine            12.1         28           3
 M methionine          1.7          4           1
 N asparagine          3.9          9           2
 P proline             6.9         16           1
 Q glutamine           6.1         14           1
 R arginine            6.5         15           1
 S serine              4.3         10           1
 T threonine           3.0          7           1
 V valine              9.1         21           3
 W tryptophan          1.7          4           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   platelet-activating factor acetylhydrolase, isoform... 
PAFAH1B3              1.000   platelet-activating factor acetylhydrolase, isoform...
PAFAH1B3              1.000   platelet-activating factor acetylhydrolase, isoform I...
PAFAH1B2              0.629   platelet-activating factor acetylhydrolase, isoform I...
LY75                  0.009   lymphocyte antigen 75 
TBC1D29               0.009   TBC1 domain family, member 29 
CPM                   0.007   carboxypeptidase M precursor 
CPM                   0.007   carboxypeptidase M precursor 
CPM                   0.007   carboxypeptidase M precursor 
LOC390213             0.007   PREDICTED: hypothetical protein LOC390213 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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