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Search of human proteins with 7657615
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657615 podocin [Homo sapiens]
(383 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657615 podocin [Homo sapiens] 751 0.0
gi|38016911 stomatin isoform a [Homo sapiens] 276 2e-74
gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens] 254 7e-68
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens] 254 7e-68
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 110 2e-24
gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens] 78 1e-14
gi|38016907 stomatin isoform b [Homo sapiens] 64 3e-10
gi|5031699 flotillin 1 [Homo sapiens] 47 2e-05
gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens] 39 0.010
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.039
gi|154800489 ER lipid raft associated 1 [Homo sapiens] 36 0.051
gi|154800487 ER lipid raft associated 1 [Homo sapiens] 36 0.051
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 36 0.051
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.19
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ... 34 0.19
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.19
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.19
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 34 0.19
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 34 0.19
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 34 0.19
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 34 0.19
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 34 0.25
gi|239757603 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|239752105 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas... 33 0.33
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 33 0.33
>gi|7657615 podocin [Homo sapiens]
Length = 383
Score = 751 bits (1939), Expect = 0.0
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MERRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
MERRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP
Sbjct: 1 MERRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
Query: 61 AATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACEWLLVLISLLFIIMTFPFS 120
AATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACEWLLVLISLLFIIMTFPFS
Sbjct: 61 AATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACEWLLVLISLLFIIMTFPFS 120
Query: 121 IWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEIV 180
IWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEIV
Sbjct: 121 IWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEIV 180
Query: 181 TKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKS 240
TKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKS
Sbjct: 181 TKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKS 240
Query: 241 IAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEAEKA 300
IAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEAEKA
Sbjct: 241 IAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEAEKA 300
Query: 301 ASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLLNCLSSPSNRTQGS 360
ASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLLNCLSSPSNRTQGS
Sbjct: 301 ASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLLNCLSSPSNRTQGS 360
Query: 361 LPFPSPSKPVEPLNPKKKDSPML 383
LPFPSPSKPVEPLNPKKKDSPML
Sbjct: 361 LPFPSPSKPVEPLNPKKKDSPML 383
>gi|38016911 stomatin isoform a [Homo sapiens]
Length = 288
Score = 276 bits (707), Expect = 2e-74
Identities = 128/253 (50%), Positives = 186/253 (73%)
Query: 95 SSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFF 154
S GLG C W+LV S LF ++TFP SIW C+K+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFF 83
Query: 155 FLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVSKAV 214
LPC D++ KVD+R + +IP EI+TKD + +D + YYR++NA+L ++++ + A
Sbjct: 84 ILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSAT 143
Query: 215 QFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGL 274
+ L QTT++ +L ++L++IL +R+ IA + + LD T WGIKVER+EIKDV+LP L
Sbjct: 144 RLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQL 203
Query: 275 QHSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEK 334
Q ++A EAEA R+A+ ++IAAE E AS +L+ A+ +++ +PAA+QLRYL TL +++ EK
Sbjct: 204 QRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEK 263
Query: 335 PSTVVLPLPFDLL 347
ST+V PLP D+L
Sbjct: 264 NSTIVFPLPIDML 276
>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
Length = 282
Score = 254 bits (650), Expect = 7e-68
Identities = 122/271 (45%), Positives = 182/271 (67%)
Query: 92 GTKSSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPG 151
G + LG C W+L +S L +I+TFP SIW C+K+++EYER ++FRLG + +AKGPG
Sbjct: 9 GVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPG 68
Query: 152 LFFFLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVS 211
L LPC+D + KVDLR T IP EI+T+D ++D + YYR+ +A ++++ V
Sbjct: 69 LILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVH 128
Query: 212 KAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLP 271
+A L QTT++ +L ++L++IL R+ IA + LD T +WGI+V R+EIKDVR+P
Sbjct: 129 QATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIP 188
Query: 272 AGLQHSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLS 331
LQ S+A EAEA R+A+ +++AAE E AS+SL+ A+ +L+ +P A+QLRYL TL +++
Sbjct: 189 VQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVA 248
Query: 332 TEKPSTVVLPLPFDLLNCLSSPSNRTQGSLP 362
TEK ST+V PLP ++L + S LP
Sbjct: 249 TEKNSTIVFPLPMNILEGIGGVSYDNHKKLP 279
>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
Length = 291
Score = 254 bits (650), Expect = 7e-68
Identities = 122/271 (45%), Positives = 182/271 (67%)
Query: 92 GTKSSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPG 151
G + LG C W+L +S L +I+TFP SIW C+K+++EYER ++FRLG + +AKGPG
Sbjct: 18 GVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPG 77
Query: 152 LFFFLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVS 211
L LPC+D + KVDLR T IP EI+T+D ++D + YYR+ +A ++++ V
Sbjct: 78 LILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVH 137
Query: 212 KAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLP 271
+A L QTT++ +L ++L++IL R+ IA + LD T +WGI+V R+EIKDVR+P
Sbjct: 138 QATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIP 197
Query: 272 AGLQHSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLS 331
LQ S+A EAEA R+A+ +++AAE E AS+SL+ A+ +L+ +P A+QLRYL TL +++
Sbjct: 198 VQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVA 257
Query: 332 TEKPSTVVLPLPFDLLNCLSSPSNRTQGSLP 362
TEK ST+V PLP ++L + S LP
Sbjct: 258 TEKNSTIVFPLPMNILEGIGGVSYDNHKKLP 288
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 110 bits (276), Expect = 2e-24
Identities = 52/165 (31%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 101 CEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD 160
C L+ + L +++TFP S WF +K+V YER+I+FRLG + +GPG+ LP +D
Sbjct: 55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 161 TYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQT 220
++ +VDLR + +P ++ +KD ++ + A +R+ + L + ++ ++ A + Q
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 221 TMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEI 265
M + L R L EI +E+ I+ + ++ VT WG++V+R+E+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens]
Length = 356
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Query: 125 VKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEIVTKD 183
V V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 38 VLFVPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 184 MFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKSIAQ 243
++ID + Y R+ + + AV L QTTM+ L SL ++ ER+S+
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 244 DAKVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEAEKAAS 302
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + ++ +E + ++
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
>gi|38016907 stomatin isoform b [Homo sapiens]
Length = 123
Score = 63.5 bits (153), Expect = 3e-10
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 290 VRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPFDLL 347
+++IAAE E AS +L+ A+ +++ +PAA+QLRYL TL +++ EK ST+V PLP D+L
Sbjct: 54 IKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDML 111
Score = 52.4 bits (124), Expect = 7e-07
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 95 SSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVV 128
S GLG C W+LV S LF ++TFP SIW C+KV+
Sbjct: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
>gi|5031699 flotillin 1 [Homo sapiens]
Length = 427
Score = 47.4 bits (111), Expect = 2e-05
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 23/178 (12%)
Query: 151 GLFFFLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRME--NASLLLSSL- 207
G F LPC+ ++ L TL + ++ T+ + + I +++ N +L ++
Sbjct: 27 GRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQVKIQGQNKEMLAAACQ 86
Query: 208 -------AHVSKAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKV 260
A ++ ++ + ++AH ++ EI +R+ ++ S GI V
Sbjct: 87 MFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDRQKFSEQVFKVASSDLVNMGISV 146
Query: 261 ERIEIKDVRLPAGLQHSLAV-------------EAEAQRQAKVRMIAAEAEKAASESL 305
+KD+ HSL EAEA+R A +R A+ EK +++ L
Sbjct: 147 VSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQYL 204
>gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens]
Length = 339
Score = 38.5 bits (88), Expect = 0.010
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 117 FPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPF 176
F S++ V ++E + +R G LL + GPG LP + +Y V LQT E+
Sbjct: 15 FCASLFSAVHKIEEGHIGVYYRGGALLTSTS-GPGFHLMLPFITSYKSVQTTLQTDEVKN 73
Query: 177 HEIVTKDMFIMEIDAI--CYYRMENA--SLLLSSLAHVSKAVQF-LVQTTMKRLLAHRSL 231
T ++ D I + + NA ++ + A KA+ F + + + + +L
Sbjct: 74 VPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTL 133
Query: 232 TEILLER-KSIAQDAKVAL--DSVTCIWGIKVERIEIKDVRLPAGLQHSL-AVEAE---- 283
E+ +E I ++ K+AL D + G+ ++ + + +P ++ + +E+E
Sbjct: 134 QEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKL 193
Query: 284 ---AQRQAKVRMIAAEAEKAA---SESLRMAAEILSG 314
AQ+Q V A K A +E + AEI G
Sbjct: 194 LIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYG 230
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.6 bits (83), Expect = 0.039
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAER---------SGGGRGRQEAGPEP------SG 47
RR+RSS+ R RG R P R + SG GRG GPEP G
Sbjct: 394 RRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGG 453
Query: 48 SGRAGTPGEPRA-PAAT 63
G+ PRA PA+T
Sbjct: 454 HGKRAKERPPRARPAST 470
>gi|154800489 ER lipid raft associated 1 [Homo sapiens]
Length = 348
Score = 36.2 bits (82), Expect = 0.051
Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 18/227 (7%)
Query: 121 IWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEIV 180
++ + ++E + +R G LL + GPG LP + T+ V LQT E+
Sbjct: 21 LYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVPCG 79
Query: 181 TKDMFIMEIDAICYYRM----ENASLLLSSLAHVSKAVQF-LVQTTMKRLLAHRSLTEIL 235
T ++ ID I M ++ + A K + F + + + + +L E+
Sbjct: 80 TSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVY 139
Query: 236 LER-KSIAQDAKVAL--DSVTCIWGIKVERIEIKDVRLPAGLQHSL-AVEAEAQR----Q 287
+E I ++ K AL D G+ ++ + + ++P ++ + +EAE +
Sbjct: 140 IELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAA 199
Query: 288 AKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEK 334
K +++ EAE +++ A +I ++R+ + TEK
Sbjct: 200 QKQKVVEKEAETERKKAVIEAEKIAQ----VAKIRFQQKVMEKETEK 242
>gi|154800487 ER lipid raft associated 1 [Homo sapiens]
Length = 348
Score = 36.2 bits (82), Expect = 0.051
Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 18/227 (7%)
Query: 121 IWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEIPFHEIV 180
++ + ++E + +R G LL + GPG LP + T+ V LQT E+
Sbjct: 21 LYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVPCG 79
Query: 181 TKDMFIMEIDAICYYRM----ENASLLLSSLAHVSKAVQF-LVQTTMKRLLAHRSLTEIL 235
T ++ ID I M ++ + A K + F + + + + +L E+
Sbjct: 80 TSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVY 139
Query: 236 LER-KSIAQDAKVAL--DSVTCIWGIKVERIEIKDVRLPAGLQHSL-AVEAEAQR----Q 287
+E I ++ K AL D G+ ++ + + ++P ++ + +EAE +
Sbjct: 140 IELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAA 199
Query: 288 AKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEK 334
K +++ EAE +++ A +I ++R+ + TEK
Sbjct: 200 QKQKVVEKEAETERKKAVIEAEKIAQ----VAKIRFQQKVMEKETEK 242
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 36.2 bits (82), Expect = 0.051
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 23/108 (21%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGR-------QEAGPEPSGSGRAGTPG 55
++A +S + RG GG+ P ++ A +S GG+ Q+A P + G P
Sbjct: 141 QKAAASGAKRRGVGGKEPRRQKPAAAGAKSRGGKSHKKPRRRGQKAAPAKNSGGGGNKPQ 200
Query: 56 EPRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACEW 103
+ A A + RG G ++P G + GL C W
Sbjct: 201 KAAAAGA------KNRGGG----------GGKKPRRGRRLLGLLPCLW 232
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 35.0 bits (79), Expect = 0.11
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 7 SSSRESRGRGGRTPHKENKRAKAERS--GGGRGRQEAGPEPSGSG-RAGTPGEPRAPAAT 63
S +SRG GG + K+A A +S GGG R+ G S SG +A T G +A AA
Sbjct: 734 SGGAKSRGSGG-AKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKAAAAG 792
Query: 64 VVDVDEVRGSGEEGTEVVA 82
V+ G G + A
Sbjct: 793 GKKPPRVKSRGGRGQKAAA 811
Score = 32.7 bits (73), Expect = 0.56
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAA 62
RR + ++ RGG + + KA +S GG+ R G +P G+ A A
Sbjct: 408 RRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGA- 466
Query: 63 TVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLG 99
E RG ++G + + GTKS G G
Sbjct: 467 ------ESRGDKKQGRQ-------KASAAGTKSRGGG 490
Score = 30.0 bits (66), Expect = 3.6
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 11 ESRGRGGRTPHKENKRAKAERSGG----GRGRQEAGPEPSGSGR-AGTPGEPRAPAATVV 65
+SR GG+ P K+ +R + +GG G+ R + G+ A G R AAT
Sbjct: 236 KSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAG 295
Query: 66 DVDEVRGSGEEG 77
+ +G G G
Sbjct: 296 EKPAAKGRGGRG 307
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 34.3 bits (77), Expect = 0.19
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 14 GRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATVVDVDEVRGS 73
G+ G P + KA R G G G + G P+G R + P P E G
Sbjct: 47 GKEGGHPVVPKAQVKA-RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGV 105
Query: 74 GE----EGTEVVALLESERPEEGTKSSGLGAC 101
G +GT +RP GT+ S G C
Sbjct: 106 GRAFRVQGT------ACQRPRAGTEGSRCGWC 131
>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
Length = 102
Score = 34.3 bits (77), Expect = 0.19
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
R ARS S + G GG + KR + GGG G AGP P G GRA G R P
Sbjct: 33 RSARSPSSHAAGGGGA---RRTKREERGHRGGGPGA--AGPGP-GLGRAEAKGRNRRP 84
Score = 31.6 bits (70), Expect = 1.3
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 5 ARSSSRESRGRGGRTPHKENKRAKAERSGGGRG----RQEAGPEPSGSGRAGT-PGEPRA 59
A S S+ SRG G R + + + +GGG R+E G G G AG PG RA
Sbjct: 16 AASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRA 75
Query: 60 PA 61
A
Sbjct: 76 EA 77
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 34.3 bits (77), Expect = 0.19
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 14 GRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATVVDVDEVRGS 73
G+ G P + KA R G G G + G P+G R + P P E G
Sbjct: 47 GKEGGHPVVPKAQVKA-RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGV 105
Query: 74 GE----EGTEVVALLESERPEEGTKSSGLGAC 101
G +GT +RP GT+ S G C
Sbjct: 106 GRAFRVQGT------ACQRPRAGTEGSRCGWC 131
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 34.3 bits (77), Expect = 0.19
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 14 GRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATVVDVDEVRGS 73
G+ G P + KA R G G G + G P+G R + P P E G
Sbjct: 47 GKEGGHPVVPKAQVKA-RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGV 105
Query: 74 GE----EGTEVVALLESERPEEGTKSSGLGAC 101
G +GT +RP GT+ S G C
Sbjct: 106 GRAFRVQGT------ACQRPRAGTEGSRCGWC 131
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 34.3 bits (77), Expect = 0.19
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATV- 64
R+ + S G G HK +K A G RG P +G G PG P P +
Sbjct: 966 RTGQKGSLGEAGAPGHKGSKGAPG--PAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023
Query: 65 VDVDEVRGSG 74
D++ GSG
Sbjct: 1024 AGFDDMEGSG 1033
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 34.3 bits (77), Expect = 0.19
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATV- 64
R+ + S G G HK +K A G RG P +G G PG P P +
Sbjct: 551 RTGQKGSLGEAGAPGHKGSKGAPG--PAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608
Query: 65 VDVDEVRGSG 74
D++ GSG
Sbjct: 609 AGFDDMEGSG 618
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 34.3 bits (77), Expect = 0.19
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATV- 64
R+ + S G G HK +K A G RG P +G G PG P P +
Sbjct: 731 RTGQKGSLGEAGAPGHKGSKGAPG--PAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788
Query: 65 VDVDEVRGSG 74
D++ GSG
Sbjct: 789 AGFDDMEGSG 798
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 34.3 bits (77), Expect = 0.19
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 16 GGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAPAATVVDVDEVRGSGE 75
GGR K ++ A+ SG R P+P G G TP R PA V + G+G
Sbjct: 1572 GGRIREKLSRAKSAKVSGATRH-----PQPKGHGSRETP---RCPAQPSVAASQEAGNGY 1623
Query: 76 EGTEVVALLESERP 89
+ + LL +E P
Sbjct: 1624 DSEDCEGLLGTEAP 1637
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 33.9 bits (76), Expect = 0.25
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 2 ERRARSSSRESRGRG-----GRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGE 56
E R S RGRG GR + RA G GRGR A P + + R PG
Sbjct: 71 EERPSGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGP 130
Query: 57 PRAPAA----TVVDVDEVRGSG 74
AA T+ + E GSG
Sbjct: 131 AGTMAAGSITTLPALPEDGGSG 152
Score = 31.6 bits (70), Expect = 1.3
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 4 RARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRA-GTPGEPRAPAA 62
R R E R G R + RA GGRGR A G GR GT APAA
Sbjct: 64 RTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAA 123
>gi|239757603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 33.5 bits (75), Expect = 0.33
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
R+ RE G + +R + + GR AG EP G+GR PG PR P
Sbjct: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARPGR--AGREPKGAGRRRRPGAPRGP 76
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.5 bits (75), Expect = 0.33
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTP------GE 56
RRA ++ R RTP A + R++AG E +G+G TP +
Sbjct: 147 RRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLTPPLPAGSPD 206
Query: 57 PRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSG 97
P +PAAT E R G LL RPE S+G
Sbjct: 207 PPSPAATAAPQPEQRPHLSRGQ--WRLLPRRRPERAAGSAG 245
>gi|239752105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 33.5 bits (75), Expect = 0.33
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
R+ RE G + +R + + GR AG EP G+GR PG PR P
Sbjct: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARPGR--AGREPKGAGRRRRPGAPRGP 76
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.5 bits (75), Expect = 0.33
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTP------GE 56
RRA ++ R RTP A + R++AG E +G+G TP +
Sbjct: 147 RRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLTPPLPAGSPD 206
Query: 57 PRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSG 97
P +PAAT E R G LL RPE S+G
Sbjct: 207 PPSPAATAAPQPEQRPHLSRGQ--WRLLPRRRPERAAGSAG 245
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.5 bits (75), Expect = 0.33
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTP------GE 56
RRA ++ R RTP A + R++AG E +G+G TP +
Sbjct: 147 RRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLTPPLPAGSPD 206
Query: 57 PRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSG 97
P +PAAT E R G LL RPE S+G
Sbjct: 207 PPSPAATAAPQPEQRPHLSRGQ--WRLLPRRRPERAAGSAG 245
>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
A [Homo sapiens]
Length = 638
Score = 33.5 bits (75), Expect = 0.33
Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 6 RSSSRESRGRGGRTPHKENKRAKA---ERS--GGGRGRQEAGPEPSGSGRAGTPGEPRA- 59
R SSRE RG R+P +++R +RS G RG E GP A P PR+
Sbjct: 532 RPSSRERRG-ASRSPSPQSRRLSRVAPDRSSNGSSRGSSEEGPSGLPGPWAFPPAVPRSL 590
Query: 60 ---PAATVVDVDEVRGSGEEGTEVVALL-----ESERPEEGTKSSGLG 99
PA + VD G G G + AL S + G + GLG
Sbjct: 591 GLLPALRLETVDP-GGGGSWGPDREALAPNSLSPSPQGHRGLEEGGLG 637
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 33.5 bits (75), Expect = 0.33
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 3 RRARSSSRESRGRGGRTPHKENKRAKAE-RSGGGRGRQEAGPEPSGSGRAGTPGEPRAPA 61
RR R R + G + KR KA+ G +EA EPS PGEP A +
Sbjct: 68 RRPRRRRRVNDAEPGSPEAPQGKRRKADGEDAGAESNEEAPGEPSAGSSEEAPGEPSAGS 127
Query: 62 ATVVDVD-EVRGSGEEGTEVVALLESERP 89
+ + S E + AL E+ P
Sbjct: 128 SEEAPGERSTSASAEAAPDGPALEEAAGP 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,894,161
Number of Sequences: 37866
Number of extensions: 742775
Number of successful extensions: 6115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 5768
Number of HSP's gapped (non-prelim): 468
length of query: 383
length of database: 18,247,518
effective HSP length: 104
effective length of query: 279
effective length of database: 14,309,454
effective search space: 3992337666
effective search space used: 3992337666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.