Guide to the Human Genome
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Name: ERLIN1 Sequence: fasta or formatted (348aa) NCBI GI: 154800487
Description:

ER lipid raft associated 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {348aa} ER lipid raft associated 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         36           2
 C cysteine            0.9          3           1
 D aspartate           3.4         12           1
 E glutamate           9.2         32           2
 F phenylalanine       3.2         11           1
 G glycine             4.0         14           2
 H histidine           2.3          8           2
 I isoleucine          7.5         26           1
 K lysine              8.9         31           2
 L leucine             8.3         29           2
 M methionine          2.6          9           1
 N asparagine          4.3         15           1
 P proline             3.4         12           1
 Q glutamine           4.6         16           2
 R arginine            4.0         14           2
 S serine              5.5         19           2
 T threonine           5.7         20           2
 V valine              7.2         25           2
 W tryptophan          0.0          0           0
 Y tyrosine            4.6         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ER lipid raft associated 1 
ERLIN1                1.000   ER lipid raft associated 1 
ERLIN2                0.712   ER lipid raft associated 2 isoform 1 
ERLIN2                0.311   ER lipid raft associated 2 isoform 2 
ERLIN2                0.311   ER lipid raft associated 2 isoform 2 
MED4                  0.021   mediator complex subunit 4 
TAF3                  0.021   RNA polymerase II transcription factor TAFII140 [Ho...
CHAF1A                0.021   chromatin assembly factor 1, subunit A (p150) 
CALD1                 0.020   caldesmon 1 isoform 1 
STOML3                0.018   stomatin-like 3 isoform 2 
STOML3                0.018   stomatin-like 3 isoform 1 
MAP9                  0.018   aster-associated protein 
FSIP1                 0.018   fibrous sheath interacting protein 1 
PHB2                  0.017   prohibitin 2 isoform 2 
PHB2                  0.017   prohibitin 2 isoform 1 
NPHS2                 0.017   podocin 
SRGAP1                0.017   SLIT-ROBO Rho GTPase activating protein 1 
TPM3                  0.017   tropomyosin 3 isoform 1 
MAPK8IP3              0.017   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.017   mitogen-activated protein kinase 8 interacting prote...
STOM                  0.015   stomatin isoform a 
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
MSN                   0.015   moesin 
GOLGA4                0.015   golgi autoantigen, golgin subfamily a, 4 
MYH10                 0.014   myosin, heavy polypeptide 10, non-muscle 
TPR                   0.014   nuclear pore complex-associated protein TPR 
FLOT2                 0.014   flotillin 2 
PHLDB2                0.014   pleckstrin homology-like domain, family B, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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