Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7657540
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
(487 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657540 schwannomin interacting protein 1 [Homo sapiens] 983 0.0
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 45 2e-04
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 44 4e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 41 0.002
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 41 0.003
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 41 0.003
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 41 0.003
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|30089954 H326 [Homo sapiens] 40 0.004
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 40 0.006
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 40 0.006
gi|27734799 REST corepressor 2 [Homo sapiens] 39 0.008
gi|240849329 hypothetical protein LOC728392 [Homo sapiens] 39 0.011
gi|4504817 potassium voltage-gated channel, shaker-related subfa... 39 0.014
gi|38788219 zinc finger protein 428 [Homo sapiens] 38 0.018
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 38 0.018
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 38 0.018
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 38 0.018
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 38 0.018
gi|110349756 zygin 2 isoform 2 [Homo sapiens] 38 0.018
gi|110349754 zygin 2 isoform 1 [Homo sapiens] 38 0.018
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 38 0.024
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 38 0.024
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 38 0.024
gi|210032580 SET domain containing 1B [Homo sapiens] 38 0.024
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.024
gi|7706501 WW domain binding protein 11 [Homo sapiens] 38 0.024
gi|4826724 zygin 1 isoform 1 [Homo sapiens] 37 0.031
gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens] 37 0.031
>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
Length = 487
Score = 983 bits (2542), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 1 MERSGQRVTTWDCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKS 60
MERSGQRVTTWDCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKS
Sbjct: 1 MERSGQRVTTWDCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKS 60
Query: 61 SSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAR 120
SSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAR
Sbjct: 61 SSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAR 120
Query: 121 EPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRR 180
EPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRR
Sbjct: 121 EPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRR 180
Query: 181 AIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQE 240
AIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQE
Sbjct: 181 AIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQE 240
Query: 241 VRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNL 300
VRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNL
Sbjct: 241 VRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNL 300
Query: 301 QICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTR 360
QICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTR
Sbjct: 301 QICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTR 360
Query: 361 QKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLR 420
QKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLR
Sbjct: 361 QKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLR 420
Query: 421 DMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHM 480
DMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHM
Sbjct: 421 DMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHM 480
Query: 481 AEKMPAK 487
AEKMPAK
Sbjct: 481 AEKMPAK 487
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 44.7 bits (104), Expect = 2e-04
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 92 WAPEEDGEEEEEEDERD-QRGYRDDRSPAREPGDVSARTRSGGGGGRSATTA---MPPPV 147
W P E+EEEE+ D ++ D+ + GD +GG ++A+ PP
Sbjct: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEG-PEAGGAEQKAASGCERLQGPPT 237
Query: 148 P-----NGNLHQHDPQDLRHNGNVVVAGRPSCSRGPR-------RAIQKPQP---AGGRR 192
P G+L D ++ G + P + GP R + P P AG
Sbjct: 238 PAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA 297
Query: 193 SGRGPAAGGLCLQPPDGGTCVPEEPPVPP 221
G PAAG + P GG V PP PP
Sbjct: 298 PGPHPAAGE--VPPGPGGPSVIHSPPPPP 324
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 43.5 bits (101), Expect = 4e-04
Identities = 65/340 (19%), Positives = 116/340 (34%), Gaps = 29/340 (8%)
Query: 19 SDSDYREDGMDLGS-DAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDY 77
SDSD + D D S D+ +S SS +S+ SNS+ + S+ SSS S S D
Sbjct: 634 SDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDS----SNSSDS 689
Query: 78 EEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGR 137
+ + + D + + D + D S + + D S + S
Sbjct: 690 SDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDS 749
Query: 138 SATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGP 197
S ++ + N D D + + + S S + +
Sbjct: 750 SNSSDSSDSSDSSN--SSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSS------ 801
Query: 198 AAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTSAQKN 257
D D ++ + + N + +S S+ +
Sbjct: 802 ----------DSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGS 851
Query: 258 ERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDAD 317
+ +S + + S ++ S S S S+ + + +DS + DSD+
Sbjct: 852 DSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDS-----SDSSNSSDSDSS 906
Query: 318 DSKTET-SLDTPLSPMSKQSSSYSDRDTTEEESESLDDMD 356
DS + S D+ S S +SS+ SD + + S S D D
Sbjct: 907 DSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSD 946
Score = 37.4 bits (85), Expect = 0.031
Identities = 62/338 (18%), Positives = 108/338 (31%), Gaps = 18/338 (5%)
Query: 14 DQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSA 73
D SDS + D SD+ SS SS +S SNS+ + S+ +SS S D S+
Sbjct: 652 DNSDSSDSSNSSNSSD-SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSD--SS 708
Query: 74 LEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGG 133
D + + + + D + + D S + D S + S
Sbjct: 709 DSDSSD-----SSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSN 763
Query: 134 GGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRS 193
S ++ + N D D ++ + + S S + + S
Sbjct: 764 SSDSSDSSDSSDSSDSSN--SSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSS 821
Query: 194 GRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTS 253
++ D D + + N + +S S
Sbjct: 822 NSSDSSNS--SDSSDSSNSSDSSDSSDSSDGSDSDSS------NRSDSSNSSDSSDSSDS 873
Query: 254 AQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKD 313
+ ++ + D +S S S S SS N + + SD
Sbjct: 874 SNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNS 933
Query: 314 SDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESES 351
+ +D S + S D+ S S SS+ SD + + S+S
Sbjct: 934 NSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDS 971
Score = 36.6 bits (83), Expect = 0.053
Identities = 61/347 (17%), Positives = 107/347 (30%), Gaps = 20/347 (5%)
Query: 12 DCDQGKHSDSDYREDGMDLG--SDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLD 69
D D SDS + D SD+ +SS SS +S SNS+ + S+ SS S D
Sbjct: 725 DSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSD 784
Query: 70 LVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSART 129
D + + D + + + D D S + + D S +
Sbjct: 785 ----SNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSN-SSDSSNSSDSSDSSNSS 839
Query: 130 RSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAG 189
S S + + + + D D + N + S S + +
Sbjct: 840 DSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSN 899
Query: 190 GRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQART 249
S ++ + ++ E + + N +
Sbjct: 900 SSDSDSSDSSNSSDSSDSSNSS-------------DSSESSNSSDNSNSSDSSNSSDSSD 946
Query: 250 NSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSG 309
+S S+ ++ + D + S S S SS + +
Sbjct: 947 SSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDS 1006
Query: 310 SDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMD 356
SD +D S + S ++ S S SS SD + + S+S D D
Sbjct: 1007 SDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSD 1053
Score = 36.2 bits (82), Expect = 0.069
Identities = 55/346 (15%), Positives = 105/346 (30%), Gaps = 5/346 (1%)
Query: 12 DCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLV 71
D SDS D + S SS+SS +S SNS+ + S+ +SS S D
Sbjct: 703 DSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSS 762
Query: 72 SALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRS 131
++ + + + + D + + D S + + D S + S
Sbjct: 763 NSSDSSDSS----DSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDS 818
Query: 132 GGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGR 191
++ + + + D D + + R S +
Sbjct: 819 DSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSD 878
Query: 192 RSGRGPA-AGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTN 250
S + D + ++ + + + + +
Sbjct: 879 SSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDS 938
Query: 251 STSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGS 310
S S+ ++ + D +S S S S SS + + S
Sbjct: 939 SNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSS 998
Query: 311 DKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMD 356
D + +D S + S D+ S S SS S+ + + S+S D D
Sbjct: 999 DSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSD 1044
Score = 35.8 bits (81), Expect = 0.090
Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 4/129 (3%)
Query: 14 DQGKHSDSDYREDGMDLG--SDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLV 71
D SDS D D SD+ +SS SS +S SNS+ + S+ SS S D
Sbjct: 993 DSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1052
Query: 72 SALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRD--DRSPAREPGDVSART 129
+ + D + + E D D D D S + + D S +
Sbjct: 1053 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1112
Query: 130 RSGGGGGRS 138
S S
Sbjct: 1113 DSSDSSDSS 1121
Score = 34.7 bits (78), Expect = 0.20
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 14 DQGKHSDSDYREDGMDLG--SDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLV 71
D SDS D D SD+ SS SS +S SNS+ + SE SS S D
Sbjct: 1104 DSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSS 1163
Query: 72 SALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRD--DRSPAREPGDVS 126
+ + + D + + + D D D D S + + D S
Sbjct: 1164 DSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1220
Score = 34.3 bits (77), Expect = 0.26
Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 4/129 (3%)
Query: 14 DQGKHSDSDYREDGMDLGSDAGSS----SSSSRASSQSNSTKVTPCSECKSSSSPGGSLD 69
D SDSD + SD+ S SS S +S SNS+ + S+ SS S D
Sbjct: 562 DSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSD 621
Query: 70 LVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSART 129
S E K + D + + + D S + + D S+ +
Sbjct: 622 SKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSS 681
Query: 130 RSGGGGGRS 138
S S
Sbjct: 682 DSSNSSDSS 690
Score = 33.5 bits (75), Expect = 0.45
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 273 DDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDADDSKTETSLDTPLSPM 332
D G G S S +S S + ++S SD DS DS + D+ S
Sbjct: 541 DSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSN 600
Query: 333 SKQSSSYSDRDTTEEESESLD 353
S SS SD + + S+S D
Sbjct: 601 SSDSSDSSDSSDSSDSSDSSD 621
Score = 32.7 bits (73), Expect = 0.76
Identities = 64/352 (18%), Positives = 107/352 (30%), Gaps = 15/352 (4%)
Query: 12 DCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLV 71
D +GK SD D D + + SS SS SS SNS+ + S+ SS S
Sbjct: 541 DSGKGKSDSSD--SDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDS 598
Query: 72 SALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRD-------DRSPAREPGD 124
S D + + + + + E D D D D S + D
Sbjct: 599 SNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSD 658
Query: 125 VSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQK 184
S + S S ++ + N D D + N + S S +
Sbjct: 659 SSNSSNSSDSSDSSDSSDSSSSSDSSN--SSDSSDSSDSSN---SSESSDSSDSSDSDSS 713
Query: 185 PQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQ 244
+ + + + ++ + + + +
Sbjct: 714 DSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS 773
Query: 245 GQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICF 304
+ +S S+ N+ + + D +S S S SS N
Sbjct: 774 SDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSS 833
Query: 305 VNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMD 356
+ + SD SD+ DS + D+ S SS SD + S+S D D
Sbjct: 834 DSSNSSD-SSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSD 884
Score = 31.2 bits (69), Expect = 2.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 306 NDSGSDK----DSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMD 356
+DSG K DSD+ DS + S S+S SD D+++ +S D D
Sbjct: 540 SDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSD 594
Score = 30.4 bits (67), Expect = 3.8
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 12 DCDQGKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLV 71
D SDS + D SD+ SS SS +S SNS+ + S+ SS+ S +
Sbjct: 967 DSSDSNSSDSSDSSNSSD-SSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSS 1025
Query: 72 SALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRD--DRSPAREPGDVSART 129
+ + D + + D D D D S + + D S +
Sbjct: 1026 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESS 1085
Query: 130 RSGGGGGRS 138
S S
Sbjct: 1086 DSSDSSNSS 1094
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 41.2 bits (95), Expect = 0.002
Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 29/194 (14%)
Query: 32 SDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVS--ALEDYEEPFPVYQKKVI 89
S + SSSSSS +SS S+S+ + S SS S G SL + AL+ P P ++ V
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVR 2591
Query: 90 DEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATT-------- 141
+ PE + + S + S+ + S S+++
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Query: 142 ------AMPPPV-----PNGNLHQHDPQ----DLRHNGNV----VVAGRPSCSRGPRRAI 182
A+P P P G P+ LR + ++ V RPS PR
Sbjct: 2652 AKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQ 2711
Query: 183 QKPQPAGGRRSGRG 196
G RR RG
Sbjct: 2712 SSSSERGSRRGQRG 2725
Score = 32.7 bits (73), Expect = 0.76
Identities = 47/178 (26%), Positives = 60/178 (33%), Gaps = 34/178 (19%)
Query: 24 REDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPV 83
R S + SSSSSS +SS S+S+ + S SSSS S P P
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------PSPA 2652
Query: 84 YQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAM 143
P + ++ G R RSP R+P D +RS
Sbjct: 2653 ---------KPGPQALPKPASPKKPPPGERRSRSP-RKPIDSLRDSRSLSYSPVERRRPS 2702
Query: 144 PPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGP----RRAIQKPQPAGGRRSGRGP 197
P P P + R G+ SR P RR P+P RS R P
Sbjct: 2703 PQPSPRDQQSSSSERGSRR-------GQRGDSRSPSHKRRRETPSPRPM-RHRSSRSP 2752
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 107 RDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNV 166
R R R RS R P + R+ SG RS + PP + P ++ +
Sbjct: 2057 RTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSAT--PPATRNHSGSRTPPVALNSSRM 2114
Query: 167 VVAGRPSCSRGPRRAIQKP---QPAGGRRSGRG--PAAGGLCLQPPDGGTCVPE 215
RPS S P + P +P G R+ AGG + P G +P+
Sbjct: 2115 SCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGP--GPRIPD 2166
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 40.8 bits (94), Expect = 0.003
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 95 EEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQ 154
EE E+ + DE R Y + GD++ T S T MPPPV + L
Sbjct: 716 EESAEQAQRRDEM-LRMYHALKEALSIIGDINTTTVS---------TPMPPPVDDSWLQV 765
Query: 155 HDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVP 214
V AGR S + P + P R RGPA G PP G+ +
Sbjct: 766 QS----------VPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPG-----PPPAGSALG 810
Query: 215 EEPPVP 220
PPVP
Sbjct: 811 GAPPVP 816
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 40.8 bits (94), Expect = 0.003
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 95 EEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQ 154
EE E+ + DE R Y + GD++ T S T MPPPV + L
Sbjct: 716 EESAEQAQRRDEM-LRMYHALKEALSIIGDINTTTVS---------TPMPPPVDDSWLQV 765
Query: 155 HDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVP 214
V AGR S + P + P R RGPA G PP G+ +
Sbjct: 766 QS----------VPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPG-----PPPAGSALG 810
Query: 215 EEPPVP 220
PPVP
Sbjct: 811 GAPPVP 816
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 10/149 (6%)
Query: 79 EPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRS 138
+P P + + WA E +++ED G D++ G+ S+ +RS G G
Sbjct: 139 KPIPATLLEETEVWAQEGPRRVKKDEDPVQIEGEDDEKRTPLSSGEASSTSRSQGTQGDV 198
Query: 139 ATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGR--- 195
A+ P GN++ H + + + SC GP Q R G+
Sbjct: 199 ASFRCSPGPLEGNVY-HKFSENSMSEKAQASPASSCLEGPAMPSTHSQAGCARHLGKPDP 257
Query: 196 ------GPAAGGLCLQPPDGGTCVPEEPP 218
PA G LQ + EEPP
Sbjct: 258 DATAPPEPAVGCSLLQQKLAAEVLNEEPP 286
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 126 SARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSR---GPRRAI 182
SAR +G G +A PP P+ H RH + GRPSCSR +
Sbjct: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSR---RHPDHAPPPGRPSCSRPLCAGSSCL 84
Query: 183 QKPQPAGGRRSGR-GPAAGGLCLQP---PDGGTCV---PEEPPVPP 221
P+PA GP ++P P GG C E PP+ P
Sbjct: 85 ATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP 130
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 126 SARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSR---GPRRAI 182
SAR +G G +A PP P+ H RH + GRPSCSR +
Sbjct: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSR---RHPDHAPPPGRPSCSRPLCAGSSCL 84
Query: 183 QKPQPAGGRRSGR-GPAAGGLCLQP---PDGGTCV---PEEPPVPP 221
P+PA GP ++P P GG C E PP+ P
Sbjct: 85 ATPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP 130
>gi|30089954 H326 [Homo sapiens]
Length = 597
Score = 40.4 bits (93), Expect = 0.004
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 14 DQGKHSDSDYREDGMDLG-SDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVS 72
++G+ + S + DL S G +R S++S T E K S S
Sbjct: 30 EEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGTDTESSGEDKDSDS--------- 80
Query: 73 ALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSG 132
+ED + +V D E+ EEEEEE+E +Q R R A D S R+
Sbjct: 81 -MEDTGHYSINDENRVHDR---SEEEEEEEEEEEEEQPRRRVQRKRANRDQDSSDDERAL 136
Query: 133 GGGGRSATTAMPPP 146
S T+A+P P
Sbjct: 137 EDWVSSETSALPRP 150
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 39.7 bits (91), Expect = 0.006
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 27 GMDLGSDAGSSSSSSRA---SSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPV 83
G+++ A SS SS+ S + S T S + ED EE V
Sbjct: 156 GLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEV 215
Query: 84 YQKKVIDEWAPE-------EDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGG 136
+ DE E E+ EEEEEE+E ++ +D+R E D R+ + G
Sbjct: 216 EEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGS 275
Query: 137 RSAT 140
S +
Sbjct: 276 ESVS 279
Score = 30.4 bits (67), Expect = 3.8
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 2 ERSGQRVTTWDCDQGKHSDSDYRE-DGMDLGSDAGSSSSSSRASSQSNSTK--------- 51
ER G V D + S S E + + GSD + SS S + Q N+T+
Sbjct: 153 ERIGLEV---DRRASRSSQSSKEEVNSEEYGSDHETGSSGS-SDEQGNNTENEEEGVEED 208
Query: 52 VTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRG 111
V E + + +D E+ EE ++ +E EE+ E++E D++++
Sbjct: 209 VEEDEEVEEDAEEDEEVDEDGEEEEEEE------EEEEEEEEEEEEEYEQDERDQKEEGN 262
Query: 112 YRDDRSPAREPGDVS-----ARTRSGGG 134
D RS A + G S RSG G
Sbjct: 263 DYDTRSEASDSGSESVSFTDGSVRSGSG 290
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 39.7 bits (91), Expect = 0.006
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 27 GMDLGSDAGSSSSSSRA---SSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPV 83
G+++ A SS SS+ S + S T S + ED EE V
Sbjct: 156 GLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEV 215
Query: 84 YQKKVIDEWAPE-------EDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGG 136
+ DE E E+ EEEEEE+E ++ +D+R E D R+ + G
Sbjct: 216 EEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGS 275
Query: 137 RSAT 140
S +
Sbjct: 276 ESVS 279
Score = 30.4 bits (67), Expect = 3.8
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 2 ERSGQRVTTWDCDQGKHSDSDYRE-DGMDLGSDAGSSSSSSRASSQSNSTK--------- 51
ER G V D + S S E + + GSD + SS S + Q N+T+
Sbjct: 153 ERIGLEV---DRRASRSSQSSKEEVNSEEYGSDHETGSSGS-SDEQGNNTENEEEGVEED 208
Query: 52 VTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRG 111
V E + + +D E+ EE ++ +E EE+ E++E D++++
Sbjct: 209 VEEDEEVEEDAEEDEEVDEDGEEEEEEE------EEEEEEEEEEEEEYEQDERDQKEEGN 262
Query: 112 YRDDRSPAREPGDVS-----ARTRSGGG 134
D RS A + G S RSG G
Sbjct: 263 DYDTRSEASDSGSESVSFTDGSVRSGSG 290
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 39.3 bits (90), Expect = 0.008
Identities = 43/151 (28%), Positives = 56/151 (37%), Gaps = 21/151 (13%)
Query: 86 KKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPP 145
++V+ EW E+DG + R +PA E D T RS A PP
Sbjct: 380 EEVLQEWEAEQDGAPGAPVPMEEARRGAPLPAPALEEDDEVQITSVSTSVPRSVPPAPPP 439
Query: 146 PVPNGNLHQHDP--QDLRHNGNVVVAGRPSCSRG----PRRAIQKPQP-------AGGRR 192
P P +L Q P + ++ P +G PR A +P P A R
Sbjct: 440 PPPPTSLSQPPPLLRPPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAAPRH 499
Query: 193 SGR-GPAAGGLCLQPPDGGTCVPEEPPVPPM 222
S R GP QPP P EPP P +
Sbjct: 500 SARPGP-------QPPPTLIGAPLEPPAPSL 523
>gi|240849329 hypothetical protein LOC728392 [Homo sapiens]
Length = 119
Score = 38.9 bits (89), Expect = 0.011
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 144 PPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLC 203
P P G + P+D P +RGPR A + AG R GR A GG
Sbjct: 18 PDPESEGLFDKPPPED------------PPAARGPRSASAAGKKAGRRAGGR--AQGGRA 63
Query: 204 LQPPDGGTCVPEEPPVPPMD 223
QPP + P + PP+D
Sbjct: 64 GQPPKAASRPPPKKEAPPLD 83
>gi|4504817 potassium voltage-gated channel, shaker-related
subfamily, member 4 [Homo sapiens]
Length = 653
Score = 38.5 bits (88), Expect = 0.014
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 16 GKHSDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALE 75
G S ++ G D SS S R Q + K + + SS P S + S E
Sbjct: 58 GGGSHHHHQSRGACTSHDPQSSRGSRRRRRQRSEKKK---AHYRQSSFPHCSDLMPSGSE 114
Query: 76 DYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGG 135
+ K++ E + EE+ EEEEEE+E + R Y + E + GGG
Sbjct: 115 E----------KILRELSEEEEDEEEEEEEEEEGRFYYSEDDHGDECSYTDLLPQDEGGG 164
Query: 136 GRSA 139
G S+
Sbjct: 165 GYSS 168
>gi|38788219 zinc finger protein 428 [Homo sapiens]
Length = 188
Score = 38.1 bits (87), Expect = 0.018
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 56 SECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDD 115
+E + + GG L ED E+ P + E+ E EEEE++E ++ DD
Sbjct: 2 TETREPAETGGYASLE---EDDEDLSPGPEHSSDSEYTLSEPDSEEEEDEEEEEEETTDD 58
Query: 116 RSPAREPGDVSARTRSGGGGG----RSATTAMPPPVP 148
P +PG + R GGG G R+ A PP P
Sbjct: 59 --PEYDPG-YKVKQRLGGGRGGPSRRAPRAAQPPAQP 92
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 38.1 bits (87), Expect = 0.018
Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 129 TRSGGGGGRS--ATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSR---GPRRAIQ 183
+ G G GRS A PP P+ H RH + GRPSCSR +
Sbjct: 2 SNGGAGAGRSPAARQVAPPGGPSSLARTHSR---RHPDHAPPPGRPSCSRPLCAGSSCLA 58
Query: 184 KPQPAGGRRSGR-GPAAGGLCLQP---PDGGTCV---PEEPPVPP 221
P+PA GP ++P P GG C E PP+ P
Sbjct: 59 TPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP 103
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 38.1 bits (87), Expect = 0.018
Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 19/212 (8%)
Query: 75 EDYEEPFPVYQKKV--IDEWAPEEDGE-EEEEEDERDQRGYRDDRSPAREPGDVSARTRS 131
ED EE F +++ +E EE+GE EEEEE+E ++ + E G
Sbjct: 915 EDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEE 974
Query: 132 GGGGGRSATTAMPPPVPNGNLHQHDPQ-------DLRHNGNVVVAGRPSCSRGPRRAIQK 184
G + A+PPP + Q +P+ ++ G G + A+
Sbjct: 975 GAPPPPTLPPALPPPESPPKV-QPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEAL-- 1031
Query: 185 PQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQ 244
P R G PAAG P V EEP PP E + + E +
Sbjct: 1032 PSQGEVEREGESPAAG------PPPQELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAE 1085
Query: 245 GQARTNSTSAQKNERESIRQKLALGSFFDDGP 276
+ T + + E+E L F D P
Sbjct: 1086 EEMETETEAEALQEKEQDDTAAMLADFIDCPP 1117
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 38.1 bits (87), Expect = 0.018
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 19 SDSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYE 78
S S GS + S SSSSR+SS S+S+ + S SSSS S + S
Sbjct: 581 SSSSSSSTSSSSGSSSSSGSSSSRSSS-SSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG 639
Query: 79 EPFPVYQKKVIDEWAPEEDGEEEEEE-----DERDQRGYRDDRSPAREPGDVSARTRSGG 133
++ +D + G E + RD +G +D S + +S +RSG
Sbjct: 640 HNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGK 699
Query: 134 GGGRS 138
RS
Sbjct: 700 RSSRS 704
Score = 30.4 bits (67), Expect = 3.8
Identities = 60/306 (19%), Positives = 103/306 (33%), Gaps = 45/306 (14%)
Query: 56 SECKSSSSPGGSLDLVSALEDYEEPFP---VYQKKVIDEWAPEEDGEEEEEEDERDQRGY 112
SE + S P +D++ +E+ + V + ++ P E+ +E E E +
Sbjct: 375 SEKQQDSQPEEVMDVLEMVENVKHVIADQEVMETNRVESVEPSENEASKELEPEMEFEIE 434
Query: 113 RDDRSPAREPG--DVSARTRSGGGGGRSATTAMPPPVPNGNLH-QHDPQ-DLRHNGNVVV 168
D + PG +VSA + + P P P Q PQ L+ V+
Sbjct: 435 PDKECKSLSPGKENVSALDMEKESEEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQPVL 494
Query: 169 AGRP-SCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEAL 227
+P S A+ +P P + G +PE P +
Sbjct: 495 QSQPPSQPEDLSLAVLQPTPQVTQEQGH----------------LLPERKDFPVESVKLT 538
Query: 228 EKHLAGLQFREQEVRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGK 287
E + + E +++ + R+ S +N+ R + S S S
Sbjct: 539 EVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSR---------------SSSSSSS 583
Query: 288 PSLSSRLQSGMNLQICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEE 347
S S+ SG + + SGS + S + TS + S SSS R +
Sbjct: 584 SSSSTSSSSGSS------SSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRG 637
Query: 348 ESESLD 353
+ D
Sbjct: 638 RGHNRD 643
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 38.1 bits (87), Expect = 0.018
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 30/150 (20%)
Query: 94 PEEDGEEEE-----EEDERDQRGYRD---DRSPAREPGDVSARTRSGGGGGRSA----TT 141
PEE+ EE+ +ER G +D DR P EPG + GG R A ++
Sbjct: 259 PEEEENEEKPLLEVSPEERPSSGQQDVAPDRGP--EPGPPAPLPPPGGARARRARLQHSS 316
Query: 142 AMPPPVPNGNLHQHDPQDLR--------HNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRS 193
A+ V G + DP + + PS GP P P GG++
Sbjct: 317 ALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGP----PNPGPDGGKQD 372
Query: 194 GRGPAAGGLCLQPPDGG---TCVPEEPPVP 220
G P AG C D C PE+ P
Sbjct: 373 GEAPPAGP-CAPATDKAEEVVCAPEDVASP 401
>gi|110349756 zygin 2 isoform 2 [Homo sapiens]
Length = 380
Score = 38.1 bits (87), Expect = 0.018
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 261 SIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDADDSK 320
S+ +KL+L F PG + + +P L G + ++ G+ D S
Sbjct: 53 SLEEKLSL-CFRPSDPGAEPPRT-AVRPITERSLLQGDEIWNALTDNYGNVMPVDWKSSH 110
Query: 321 TETS--LDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPM 378
T T L LS S D EE E LD + + + +
Sbjct: 111 TRTLHLLTLNLSEKGVSDSLLFDTSDDEELREQLDMHSIIVSCVNDEPLFTADQVIEEIE 170
Query: 379 AKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTD--LRDMTIGQLQVIVNDLHS 436
MQ + ++ + +D L + + L + S + ++ +++ +L I+ ++ +
Sbjct: 171 EMMQESPDPEDDETPTQSDRLSMLSQEIQTLKRSSTGSYEERVKRLSVSELNEILEEIET 230
Query: 437 QIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKH 479
I+ +EELVQ L +RDEL E++ I L Q++H
Sbjct: 231 AIKEYSEELVQQLALRDELEFEKEVKNSFISVLIEVQNKQKEH 273
>gi|110349754 zygin 2 isoform 1 [Homo sapiens]
Length = 353
Score = 38.1 bits (87), Expect = 0.018
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 261 SIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDADDSK 320
S+ +KL+L F PG + + +P L G + ++ G+ D S
Sbjct: 53 SLEEKLSL-CFRPSDPGAEPPRT-AVRPITERSLLQGDEIWNALTDNYGNVMPVDWKSSH 110
Query: 321 TETS--LDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPM 378
T T L LS S D EE E LD + + + +
Sbjct: 111 TRTLHLLTLNLSEKGVSDSLLFDTSDDEELREQLDMHSIIVSCVNDEPLFTADQVIEEIE 170
Query: 379 AKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTD--LRDMTIGQLQVIVNDLHS 436
MQ + ++ + +D L + + L + S + ++ +++ +L I+ ++ +
Sbjct: 171 EMMQESPDPEDDETPTQSDRLSMLSQEIQTLKRSSTGSYEERVKRLSVSELNEILEEIET 230
Query: 437 QIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKH 479
I+ +EELVQ L +RDEL E++ I L Q++H
Sbjct: 231 AIKEYSEELVQQLALRDELEFEKEVKNSFISVLIEVQNKQKEH 273
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 37.7 bits (86), Expect = 0.024
Identities = 35/187 (18%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 311 DKDSDADDSKTET------SLDTPLSPMSKQSSSYSD--RDTTEEESESLDDMDFLTRQK 362
+K+ A ++K + LD ++ ++K+ + + + T ++ D ++ LT+ K
Sbjct: 971 EKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAK 1030
Query: 363 -KLQAEAKMALAMAKPMAKMQVEVEKQNRK--------KSPVADLLPHMPHISECLMKRS 413
KL+ + + K+++++E+ RK + + D+ + E L K+
Sbjct: 1031 IKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQLDEKLKKKE 1090
Query: 414 LKPTDLR-----DMTIG-QLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIE 467
+ ++L+ + +G QLQ + +L ++IE L EE+ R + ++ + ++E
Sbjct: 1091 FEISNLQSKIEDEQALGIQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELE 1150
Query: 468 DLTRHAE 474
+++ E
Sbjct: 1151 EISERLE 1157
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 37.7 bits (86), Expect = 0.024
Identities = 35/187 (18%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 311 DKDSDADDSKTET------SLDTPLSPMSKQSSSYSD--RDTTEEESESLDDMDFLTRQK 362
+K+ A ++K + LD ++ ++K+ + + + T ++ D ++ LT+ K
Sbjct: 971 EKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAK 1030
Query: 363 -KLQAEAKMALAMAKPMAKMQVEVEKQNRK--------KSPVADLLPHMPHISECLMKRS 413
KL+ + + K+++++E+ RK + + D+ + E L K+
Sbjct: 1031 IKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQLDEKLKKKE 1090
Query: 414 LKPTDLR-----DMTIG-QLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIE 467
+ ++L+ + +G QLQ + +L ++IE L EE+ R + ++ + ++E
Sbjct: 1091 FEISNLQSKIEDEQALGIQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELE 1150
Query: 468 DLTRHAE 474
+++ E
Sbjct: 1151 EISERLE 1157
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 37.7 bits (86), Expect = 0.024
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 33/248 (13%)
Query: 20 DSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEE 79
D D+ +D SD GSSSS S++ + + P G + + E+ EE
Sbjct: 263 DGDFEGQEVDYMSD-GSSSSQEEPESKAKAPQ--------QEEGPKGVDEQSDSSEESEE 313
Query: 80 PFPVYQKKVIDEWAPEEDGEEEEEE-----DERDQRGYRDDRSPAREPGDVSARTRSGGG 134
P PEED EEEEE+ E+ +R + S + E D+ + S
Sbjct: 314 EKP-----------PEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSALF 362
Query: 135 GGRSATTAMPPPVPNGNLHQHDPQ---DLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGR 191
+ T P+G + + + G+ R + S+ + PA R
Sbjct: 363 MAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAAKR 422
Query: 192 -RSGRGP--AAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQAR 248
R GP +G QPP G T P V + +A+ ++L +++ + Q +
Sbjct: 423 LRLDTGPQSLSGKSTPQPPSGKT-TPNSGDVQVTE-DAVRRYLTRKPMTTKDLLKKFQTK 480
Query: 249 TNSTSAQK 256
S+++
Sbjct: 481 KTGLSSEQ 488
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 37.7 bits (86), Expect = 0.024
Identities = 47/205 (22%), Positives = 68/205 (33%), Gaps = 18/205 (8%)
Query: 20 DSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEE 79
DSD R++ + D S +S + S+ + K+ ++ S E E
Sbjct: 1067 DSDDRDESENDDEDTALSEASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFESSSE 1126
Query: 80 PFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSA 139
P + + A EE+ EEEEEE E SA G A
Sbjct: 1127 SSPSSSEDEEEVVAREEEEEEEEEE-------------MVAEESMASAGPEDFEQDGEEA 1173
Query: 140 TTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPA- 198
A P + +L + D+ V RPS P + +PA R P
Sbjct: 1174 ALAPGAPAVD-SLGMEEEVDIETEA-VAPEERPSMLDEPPLPVGVEEPADSREPPEEPGL 1231
Query: 199 --AGGLCLQPPDGGTCVPEEPPVPP 221
G + L P V PP+ P
Sbjct: 1232 SQEGAMLLSPEPPAKEVEARPPLSP 1256
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.024
Identities = 32/109 (29%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 116 RSPAREPGDVSARTRSGGGG--GRSATTAMP--PPVPNGNLHQHDPQDLRHNGNVVVAGR 171
RSP PG GG G P PP GN Q P + G +
Sbjct: 88 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDK 147
Query: 172 PSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVP 220
R P Q P P GG + P G PP G P+ PP P
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPP 196
Score = 35.8 bits (81), Expect = 0.090
Identities = 31/109 (28%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 116 RSPAREPGDVSARTRSGGGG--GRSATTAMP--PPVPNGNLHQHDPQDLRHNGNVVVAGR 171
RSP PG GG G P PP G Q P + G +
Sbjct: 149 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDK 208
Query: 172 PSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVP 220
S+ P Q P P GG + P G PP G P+ PP P
Sbjct: 209 SRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 257
Score = 34.3 bits (77), Expect = 0.26
Identities = 23/76 (30%), Positives = 27/76 (35%)
Query: 145 PPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCL 204
PP GN Q P + G + R P Q P P GG + P G
Sbjct: 60 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 119
Query: 205 QPPDGGTCVPEEPPVP 220
PP G P+ PP P
Sbjct: 120 GPPPQGGNRPQGPPPP 135
Score = 34.3 bits (77), Expect = 0.26
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 145 PPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRG--PRRAIQKPQPAGGRRSGRGPAAGGL 202
PP GN Q P + G G S S P + PQ G G P AGG
Sbjct: 243 PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGN 302
Query: 203 CLQPPDGGTCVPEEPPVPP 221
QP P+ PP PP
Sbjct: 303 PQQPQAPPAGQPQGPPRPP 321
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.7 bits (86), Expect = 0.024
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 23/218 (10%)
Query: 12 DCDQGKHSDS--DYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLD 69
D DQ KH DS D D D SD +N K + S + + PG S
Sbjct: 261 DMDQDKHDDSTDDSDTDKSDGESDGDEFVHRDNGERDNNEEKKSGLS-VRFADMPGKSRK 319
Query: 70 LVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSART 129
+++ P ++ + PEE G E EE E D DD S A + +
Sbjct: 320 KKKNMKELT-PLQAMMLRMAGQEIPEE-GREVEEFSEDDDEDDSDD-SEAEKQSQKQHKE 376
Query: 130 RSGGGGGRSATT---AMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQ 186
S G +A++ A P VP + Q P + G P P ++ P
Sbjct: 377 ESHSDGTSTASSQQQAPPQSVPPSQI-QAPP----------MPGPPPLGPPPAPPLRPPG 425
Query: 187 PAGGRRSGRGPAAGGLCLQPPDGGTCVPEE---PPVPP 221
P G G P A P G P PP PP
Sbjct: 426 PPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPP 463
>gi|4826724 zygin 1 isoform 1 [Homo sapiens]
Length = 392
Score = 37.4 bits (85), Expect = 0.031
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 334 KQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKS 393
K+ ++++ E +++ LT + ++ +M P + +V E+ + S
Sbjct: 141 KEEEEFNEKS---ENDSGINEEPLLTADQVIEEIEEMMQNSPDPEEEEEVLEEEDGGETS 197
Query: 394 PVAD--LLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLI 451
AD LL M +++ + LR M+ +L +++ + I +EELVQ L
Sbjct: 198 SQADSVLLQEMQALTQTF-NNNWSYEGLRHMSGSELTELLDQVEGAIRDFSEELVQQLAR 256
Query: 452 RDELHTEQDAMLVDIEDLTRHAESQQKHMAEKM 484
RDEL E++ I L +++QK E M
Sbjct: 257 RDELEFEKEVKNSFITVLI-EVQNKQKEQRELM 288
>gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens]
Length = 377
Score = 37.4 bits (85), Expect = 0.031
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 37 SSSSSRASSQSNSTKVTPCSECKSSSSPG-------GSLDLVSALEDYEEPFPVYQKKVI 89
S SS A + +S+ ++P S +SSSPG GS L EE V K
Sbjct: 249 SPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGEGVVDVK-- 306
Query: 90 DEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGD---VSARTRSGGGG 135
+ E GEEE+ ED+ D+ DD + D V R GG G
Sbjct: 307 GQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDG 355
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,983,095
Number of Sequences: 37866
Number of extensions: 1270762
Number of successful extensions: 14651
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 10998
Number of HSP's gapped (non-prelim): 2772
length of query: 487
length of database: 18,247,518
effective HSP length: 106
effective length of query: 381
effective length of database: 14,233,722
effective search space: 5423048082
effective search space used: 5423048082
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.