Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 76563933
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform gamma [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 240 2e-64
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 182 4e-47
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 182 4e-47
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 45 1e-05
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 45 2e-05
gi|10834978 interleukin 8 precursor [Homo sapiens] 44 2e-05
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 43 5e-05
gi|22538814 small inducible cytokine A5 precursor [Homo sapiens] 43 5e-05
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 40 3e-04
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 40 4e-04
gi|4759074 small inducible cytokine A16 precursor [Homo sapiens] 40 4e-04
gi|4885587 small inducible cytokine A13 precursor [Homo sapiens] 39 0.001
gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo sapiens] 39 0.001
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 39 0.001
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 37 0.003
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 35 0.010
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 35 0.013
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 34 0.029
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|22538804 small inducible cytokine A22 precursor [Homo sapiens] 32 0.085
gi|157785548 PAS domain containing 1 [Homo sapiens] 32 0.085
gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 32 0.085
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 32 0.11
gi|4506835 small inducible cytokine A21 precursor [Homo sapiens] 32 0.11
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 32 0.11
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 32 0.11
gi|77695917 platelet-derived growth factor alpha isoform 1 prepr... 32 0.14
gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens] 31 0.19
gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Hom... 31 0.19
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 240 bits (613), Expect = 2e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119
ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
ARLKNNNRQVCIDPKLKWIQEYLEKALNK
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
ARLKNNNRQVCIDPKLKWIQEYLEKALNK
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G V RC C + N++ + + + P+CA +++A
Sbjct: 17 RVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNKG 90
LKN ++ C++P +Q+ +EK LNKG
Sbjct: 77 TLKNG-KKACLNPASPMVQKIIEKILNKG 104
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 44.7 bits (104), Expect = 2e-05
Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G P++ RC C + N++ +K+ + P+CA +++A
Sbjct: 17 RVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNKGR 91
LKN + C++P +++ +EK L G+
Sbjct: 77 TLKNGQK-ACLNPASPMVKKIIEKMLKNGK 105
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN 54
M +K+ V L+ L+ ALC P S RC C + + +K L+++ + P+
Sbjct: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
Query: 55 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
CA +I+ +L ++ R++C+DPK W+Q +EK L +
Sbjct: 61 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKR 95
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 43.1 bits (100), Expect = 5e-05
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILN----TPNCA-LQI 59
V+ +L ++L L G PV RC C ++ +++ LK L +P+C ++I
Sbjct: 6 VLFLLGIILLVLIGVQGTPVVRKGRCSC--ISTNQGTIHLQSLKDLKQFAPSPSCEKIEI 63
Query: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119
+A LKN Q C++P ++E ++K E++V +K+K K+ +K+K + RK+
Sbjct: 64 IATLKNGV-QTCLNPDSADVKELIKK------WEKQVSQKKKQKNGKKHQKKKVLKVRKS 116
>gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]
Length = 91
Score = 43.1 bits (100), Expect = 5e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 7 VVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVK-HLK--ILNTPNCALQIVARL 63
+ ++L+ TALC S PC F +++AR + H+K + C+ V +
Sbjct: 8 LAVILIATALCAPASASPYSSDTTPCCF--AYIARPLPRAHIKEYFYTSGKCSNPAVVFV 65
Query: 64 KNNNRQVCIDPKLKWIQEYL 83
NRQVC +P+ KW++EY+
Sbjct: 66 TRKNRQVCANPEKKWVREYI 85
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 40.4 bits (93), Expect = 3e-04
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G V+ RC C + N++ + + + P+CA +++A
Sbjct: 17 RVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNKGR 91
LKN R+ C++P +++ +EK LN +
Sbjct: 77 TLKNG-RKACLNPASPIVKKIIEKMLNSDK 105
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 40.0 bits (92), Expect = 4e-04
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQI 59
++ +L+L+ L+ PVS RC C V + L++ P C+ +++
Sbjct: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
Query: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALNKGRRE 93
VA LKN +QVC+DP+ ++++ ++K L+ G ++
Sbjct: 81 VASLKNG-KQVCLDPEAPFLKKVIQKILDSGNKK 113
>gi|4759074 small inducible cytokine A16 precursor [Homo sapiens]
Length = 120
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 6 VVVLVLVLTALCLSDGKP---VSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVAR 62
++VL+L++T+ S K V+ C +++E + R V + NC L +
Sbjct: 10 LLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYR--KALNCHLPAIIF 67
Query: 63 LKNNNRQVCIDPKLKWIQEYLE 84
+ NR+VC +P W+QEY++
Sbjct: 68 VTKRNREVCTNPNDDWVQEYIK 89
>gi|4885587 small inducible cytokine A13 precursor [Homo sapiens]
Length = 98
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 1 MNAKVVVVLVLVLTALCLSDG--KPVSLSYRCPCRFFESHVARANVKHLK--ILNTPNCA 56
M V++ +L++TA G +P +L+ C F S + +++ LK ++ T C
Sbjct: 1 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSS-KKISLQRLKSYVITTSRCP 59
Query: 57 LQIVARLKNNNRQVCIDPKLKWIQEYLE 84
+ V +++C DPK KW+Q Y++
Sbjct: 60 QKAVIFRTKLGKEICADPKEKWVQNYMK 87
>gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo
sapiens]
Length = 99
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 8 VLVLVLTALCLSD---GKPVSLSYRCPC--RFFESHVARANVKHLKILNTPNCALQIVAR 62
+L L+LTA S +PV ++ C RF + + ++ + + +C + V
Sbjct: 7 LLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCPREAVIF 66
Query: 63 LKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKV 96
++++C DP KW+Q+++ K L+K + K+
Sbjct: 67 KTKLDKEICADPTQKWVQDFM-KHLDKKTQTPKL 99
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 3 AKVVVVLVLVLTALCLSDGKPVSL--SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQ 58
A +V++L+L S G ++ RC C V + +L++ P C+ ++
Sbjct: 20 ALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQCSKVE 79
Query: 59 IVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRRE 93
+VA LKN +++C+DP+ ++++ ++K L+ G +E
Sbjct: 80 VVASLKNG-KEICLDPEAPFLKKVIQKILDGGNKE 113
>gi|149999382 small inducible cytokine B10 precursor [Homo
sapiens]
Length = 98
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESH-VARANVKHLKILNTPNCA--L 57
MN +++ L+ L G P+S + RC C + V +++ L+I+ +
Sbjct: 1 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV 60
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGR 91
+I+A +K + C++P+ K I+ L KA++K R
Sbjct: 61 EIIATMKKKGEKRCLNPESKAIKNLL-KAVSKER 93
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 4 KVVVVLVLVLTALC----------LSDGKPVSLS------YRCPCRFFESHVARANVKHL 47
+V+++L L+LTAL L+ GK SL RC C S + N++ L
Sbjct: 21 QVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSL 80
Query: 48 KILNT-PNC-ALQIVARLKNNNRQVCIDPKLKWIQEYLEKAL 87
+++ +C ++++A LK+ R++C+DP I++ ++K L
Sbjct: 81 EVIGKGTHCNQVEVIATLKDG-RKICLDPDAPRIKKIVQKKL 121
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 52 TPNCALQIVARLKNNNRQVCIDPKLKWIQEYL 83
+P C V L RQ+C DP KW+Q+Y+
Sbjct: 51 SPQCPKPGVILLTKRGRQICADPNKKWVQKYI 82
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 34.7 bits (78), Expect = 0.017
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 80 QEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+E +K K ++++K KK+K KKK++KKRK +KRK
Sbjct: 110 KEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+K K ++++K KK+K KKKR++KRK +KRK
Sbjct: 118 KKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRK 152
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 80 QEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+E EK K ++++K KK+K KKK++KK+K +K++
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKR 141
Score = 33.1 bits (74), Expect = 0.050
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 80 QEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+E +K K ++++K KK+K KKK++KK+K +KRK
Sbjct: 108 KEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRK 146
Score = 33.1 bits (74), Expect = 0.050
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 73 DPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+ K K ++ +K K ++++K KK+K K+KR++KRK +KRK
Sbjct: 111 EKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRK 156
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 74 PKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
P+ + +E ++ K ++++K KK+K KKK++KK+K +KRK
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRK 144
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+K K ++++K KK++ K+KR++KRK +K+K
Sbjct: 124 KKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKK 158
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 73 DPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQK-KRKAAQKRK 118
+ K K ++ +K K ++++K KK+K KKK++K KRK +KRK
Sbjct: 104 EKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRK 150
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKR 117
+K K ++++K K+++ K+KR+KKRK +K+
Sbjct: 128 KKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKK 161
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+K K ++++K K+++ K+KR++K+K +K+K
Sbjct: 126 KKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKK 160
Score = 26.6 bits (57), Expect = 4.7
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+K K ++++K +K K +K+++KK++ +K+K
Sbjct: 127 KKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKK 161
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 7 VVLVLVLTALCLSDG--KPVSLSYRCPCRFFES-HVARANVKHLKILNTPN-CALQIVAR 62
++L+L++++L G + S RC C S + R + ++IL N C + +
Sbjct: 8 LLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIV 67
Query: 63 LKNNNRQVCIDPKLKWIQEYLE 84
K N VC+DP+ +WIQ +E
Sbjct: 68 WKKNKSIVCVDPQAEWIQRMME 89
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119
EK K + +EK +KEK KKK++KK+K +K+ N
Sbjct: 79 EKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLN 114
Score = 32.3 bits (72), Expect = 0.085
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
EK K + +EK +KEK +KK++KK+K +K+K
Sbjct: 77 EKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKK 111
Score = 30.8 bits (68), Expect = 0.25
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
EK K + +EK +KEK +K+++KK+K +K+K
Sbjct: 75 EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109
Score = 29.3 bits (64), Expect = 0.72
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 85 KALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
K K + +EK +KEK +K+++KK+K +K+K
Sbjct: 74 KEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKK 107
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQ 115
EK K + +EK KK+K KKK++KK+ A+
Sbjct: 85 EKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAK 116
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 84 EKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
E A +GR++ K KK+K K +KK+K K+K
Sbjct: 20 ESAWKRGRKK-KTTKKKKKKKTTMKKKKKTTTKKK 53
>gi|22538804 small inducible cytokine A22 precursor [Homo sapiens]
Length = 93
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYR---CPCRFFESHVARANVKHLKILNTPNCAL 57
+ ++VVLVL+ AL ++ P + C + + VKH + +C
Sbjct: 4 LQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHF-YWTSDSCPR 62
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEK 85
V L ++++C DP++ W++ L K
Sbjct: 63 PGVVLLTFRDKEICADPRVPWVKMILNK 90
>gi|157785548 PAS domain containing 1 [Homo sapiens]
Length = 773
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 55 CALQIVARLKNNN--RQVCI----------DPKLKWIQEYLEKALNKGRREEKVGKKEKI 102
C L + LKN ++ C+ + LK Q L + L + R + KV K++K+
Sbjct: 456 CGLSLSNSLKNTGELQEPCVAFNQQQLVQQEQHLKEQQRQLREQLQQLREQRKVQKQKKM 515
Query: 103 GKKKRQKKRKAAQKRK 118
+KK+ +++K +K+K
Sbjct: 516 QEKKKLQEQKMQEKKK 531
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 79 IQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRK 118
+Q+ + K +E+K+ +K+K+ +++RQKK+K +++K
Sbjct: 509 VQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKK 548
>gi|8923271 coiled-coil domain containing 49 [Homo sapiens]
Length = 425
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 64 KNNNRQVCIDP-KLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119
+ R+V +P K+K I+E L+ +L K +EK KKEK K K+ K R ++ R +
Sbjct: 147 EEKKREVLNNPVKMKKIKELLQMSLEK---KEKKKKKEKKKKHKKHKHRSSSSDRSS 200
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCALQIVA 61
V+ +LVLV L+ P+ C F S+ AR ++ + + C+ V
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCF--SYTARKLPRNFVVDYYETSSLCSQPAVV 64
Query: 62 RLKNNNRQVCIDPKLKWIQEYL 83
+QVC DP W+QEY+
Sbjct: 65 FQTKRGKQVCADPSESWVQEYV 86
>gi|4506835 small inducible cytokine A21 precursor [Homo sapiens]
Length = 134
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLK 64
+++VL + SDG + R + V R+ K L A+ + R K
Sbjct: 10 LILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIPAILFLPR-K 68
Query: 65 NNNRQVCIDPKLKWIQEYLE------------KALNKGRREEKVGKKEKIGKKKRQKKRK 112
+ ++C DPK W+Q+ ++ + K R K GKK K K ++ +R
Sbjct: 69 RSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSKGCKRTERS 128
Query: 113 AAQK 116
K
Sbjct: 129 QTPK 132
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCALQIVA 61
V+ +LVLV L+ P+ C F S+ AR ++ + + C+ V
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCF--SYTARKLPRNFVVDYYETSSLCSQPAVV 64
Query: 62 RLKNNNRQVCIDPKLKWIQEYL 83
+QVC DP W+QEY+
Sbjct: 65 FQTKRGKQVCADPSESWVQEYV 86
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 32.0 bits (71), Expect = 0.11
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 2 NAKVVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANV----KHLKILNTPN 54
+A VV L ++C SD P L + R R + V +A+V +LKI +
Sbjct: 244 SAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGS 303
Query: 55 CALQIVARLKN----NNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKI--GKKKRQ 108
+ + R ++ +N + + P L Q +LE+A +G + EK+ K E G+KKR+
Sbjct: 304 LSQSTICRFESLTLSHNNMIALKPIL---QAWLEEA--EGAQREKMNKPELFNGGEKKRK 358
Query: 109 KKRKAAQKRKN 119
+ AA ++++
Sbjct: 359 RTSIAAPEKRS 369
>gi|77695917 platelet-derived growth factor alpha isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 74 PKLKWIQEYLEK---------ALNKGRREEKVGKKEKIGKKKRQKKRK 112
PKLK +Q LE+ +LN REE G+ + GKK+++K+ K
Sbjct: 162 PKLKEVQVRLEEHLECACATTSLNPDYREEDTGRPRESGKKRKRKRLK 209
>gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens]
Length = 92
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 9 LVLVLTALCLSDGKPVSLSYRCP---CRFFESHVARANVKHLKILNTPNCALQIVARLKN 65
L ++L + L + SL+ P C + S N + C+ V L
Sbjct: 8 LAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTK 67
Query: 66 NNRQVCIDPKLKWIQEYL 83
+RQVC DP +W+Q+Y+
Sbjct: 68 RSRQVCADPSEEWVQKYV 85
>gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Homo
sapiens]
Length = 92
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCAL 57
M V V+ +L+L A S + P S+ AR ++ + + C+
Sbjct: 1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ 60
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYL 83
V ++QVC DP W+QEY+
Sbjct: 61 PAVVFQTKRSKQVCADPSESWVQEYV 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,361,633
Number of Sequences: 37866
Number of extensions: 183099
Number of successful extensions: 2349
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1516
Number of HSP's gapped (non-prelim): 667
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.