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Search of human proteins with 75813628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|75813628 glycophorin A precursor [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|75813628 glycophorin A precursor [Homo sapiens] 291 1e-79
gi|75905815 glycophorin B precursor [Homo sapiens] 116 8e-27
gi|149408157 glycophorin E precursor [Homo sapiens] 80 8e-16
gi|149408155 glycophorin E precursor [Homo sapiens] 80 8e-16
gi|93102405 hypothetical protein LOC84182 [Homo sapiens] 32 0.15
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 32 0.20
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 32 0.20
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 32 0.26
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 32 0.26
gi|83367077 mucin 16 [Homo sapiens] 31 0.45
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 30 0.59
gi|11225609 angiotensin I converting enzyme 2 precursor [Homo sa... 30 1.00
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 30 1.00
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 29 1.7
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 29 1.7
gi|151301154 mucin 6, gastric [Homo sapiens] 28 2.2
gi|14195607 protocadherin beta 1 precursor [Homo sapiens] 28 2.2
gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo... 28 3.8
gi|4885069 ras homolog gene family, member E [Homo sapiens] 28 3.8
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 28 3.8
gi|4885581 Rho family GTPase 2 [Homo sapiens] 28 3.8
gi|169218211 PREDICTED: similar to plectin 1, partial [Homo sapi... 27 6.5
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 27 6.5
gi|11415038 solute carrier family 22 member 3 [Homo sapiens] 27 6.5
gi|19557645 secretogranin III [Homo sapiens] 27 6.5
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 27 6.5
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 27 6.5
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 27 6.5
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 27 6.5
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 27 6.5
>gi|75813628 glycophorin A precursor [Homo sapiens]
Length = 150
Score = 291 bits (745), Expect = 1e-79
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
Sbjct: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
Query: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK 120
EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
Sbjct: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK 120
Query: 121 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ 150
SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
Sbjct: 121 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ 150
>gi|75905815 glycophorin B precursor [Homo sapiens]
Length = 91
Score = 116 bits (290), Expect = 8e-27
Identities = 75/122 (61%), Positives = 77/122 (63%), Gaps = 35/122 (28%)
Query: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN
Sbjct: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN--------------- 45
Query: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPE---ITLIIFGVMAGVIGTILLISYGIRRL 117
GE QL H F+ P I LII VMAG+IGTILLISY IRRL
Sbjct: 46 -----------------GETGQLVHRFTVPAPVVIILIILCVMAGIIGTILLISYSIRRL 88
Query: 118 IK 119
IK
Sbjct: 89 IK 90
>gi|149408157 glycophorin E precursor [Homo sapiens]
Length = 78
Score = 79.7 bits (195), Expect = 8e-16
Identities = 56/115 (48%), Positives = 62/115 (53%), Gaps = 37/115 (32%)
Query: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTN + +A
Sbjct: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------ 54
Query: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIR 115
+ +IF VM V+G I+LISY IR
Sbjct: 55 -------------------------------MARVIFEVMLVVVGMIILISYCIR 78
>gi|149408155 glycophorin E precursor [Homo sapiens]
Length = 78
Score = 79.7 bits (195), Expect = 8e-16
Identities = 56/115 (48%), Positives = 62/115 (53%), Gaps = 37/115 (32%)
Query: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTN + +A
Sbjct: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------ 54
Query: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIR 115
+ +IF VM V+G I+LISY IR
Sbjct: 55 -------------------------------MARVIFEVMLVVVGMIILISYCIR 78
>gi|93102405 hypothetical protein LOC84182 [Homo sapiens]
Length = 757
Score = 32.3 bits (72), Expect = 0.15
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 18 SALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEET 77
++LS T A H + V +++SS+ HK P V + + E
Sbjct: 131 TSLSETSKARHDNLDGDVLGNFVSSK-RPPHKSKPMQTVPGETPVLTSAWEKIDKLHSEP 189
Query: 78 GERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDT 133
V+ S P+ LI+ G+M+G I + S+ L + SPS P ++
Sbjct: 190 SLDVKRMGENSRPKSGLIVRGMMSGPIASSPQDSFHRHYLRRSSPSSSSTQPQEES 245
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 32.0 bits (71), Expect = 0.20
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 30 STSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFSE 89
STSS S +S++ T +R +A PR H S+ + + PP+ + QL+ F E
Sbjct: 152 STSSETVSSTAASKSGKTPERTEASAKPRPH--SDEYSKKIPPPKPKRNPNTQLSTSFDE 209
Query: 90 PEI 92
I
Sbjct: 210 TYI 212
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 32.0 bits (71), Expect = 0.20
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 30 STSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFSE 89
STSS S +S++ T +R +A PR H S+ + + PP+ + QL+ F E
Sbjct: 152 STSSETVSSTAASKSGKTPERTEASAKPRPH--SDEYSKKIPPPKPKRNPNTQLSTSFDE 209
Query: 90 PEI 92
I
Sbjct: 210 TYI 212
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 31.6 bits (70), Expect = 0.26
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 16 SISALSTTEVAMHTSTSSSVTKSYISSQ--TNDTHKRDTYAATPRAHEVSEISVRTVYPP 73
S S+ STT TSTS+S + S +S T+ T T +T + S+R + P
Sbjct: 182 STSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTPH 241
Query: 74 EEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSP 131
+++ G LA F + G LL+S G + L S V P PSP
Sbjct: 242 QKQCG---ALASAF---------------LFGLSLLVSTGTKGL---GRSLVTPRPSP 278
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 31.6 bits (70), Expect = 0.26
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 16 SISALSTTEVAMHTSTSSSVTKSYISSQ--TNDTHKRDTYAATPRAHEVSEISVRTVYPP 73
S S+ STT TSTS+S + S +S T+ T T +T + S+R + P
Sbjct: 182 STSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTPH 241
Query: 74 EEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSP 131
+++ G LA F + G LL+S G + L S V P PSP
Sbjct: 242 QKQCG---ALASAF---------------LFGLSLLVSTGTKGL---GRSLVTPRPSP 278
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.8 bits (68), Expect = 0.45
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 2 YGKIIFVLLLSEIVSISA-LSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
+G VL SE +A + TT HT+ S+S++ +SS+T + TY+ TP
Sbjct: 6898 HGSQSSVLADSEKTKATAPMDTTSTMGHTTVSTSMS---VSSETTKIKRESTYSLTPGLR 6954
Query: 61 EVS 63
E S
Sbjct: 6955 ETS 6957
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 30.4 bits (67), Expect = 0.59
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 16 SISALSTTEVAMHTSTSSSVTKSYISSQTNDTHK--RDTYAATPRAHEVSEISVRTVYPP 73
S S+LS+T A TSS+ + + S +D HK R+ +PR S +YP
Sbjct: 1675 STSSLSSTHSASPNVTSSAPSSARASPLLSDKHKHSRENSCLSPRERPCS-----AIYPT 1729
Query: 74 EEETGERVQLAH 85
E +R+ H
Sbjct: 1730 PVEPSQRMLFNH 1741
>gi|11225609 angiotensin I converting enzyme 2 precursor [Homo
sapiens]
Length = 805
Score = 29.6 bits (65), Expect = 1.00
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 92 ITLIIFGVMAGVI--GTILLISYGIRRLIKKSPSDVKPLPSPDTDV 135
I LI+FGV+ GVI G ++LI GIR KK+ + P D+
Sbjct: 741 IWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDI 786
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 29.6 bits (65), Expect = 1.00
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 11 LSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTH----------KRDTYAATPRAH 60
+++ VS+S LS EV M+T T S+T S + + A+TP+
Sbjct: 3084 ITQTVSLSHLSQGEVRMNTPTLPSITYSIRPEALHSPRAPLQPQQIEVRAPQRASTPQPA 3143
Query: 61 EVSEISVRTVYPPEEETGERVQLA 84
++ + +PPEEE + +A
Sbjct: 3144 PAGVPALASQHPPEEEVHYHLPVA 3167
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 28.9 bits (63), Expect = 1.7
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 15 VSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPE 74
VS S S+ + + T TS+ + SSQ H + T A H+ +++ + + PPE
Sbjct: 533 VSSSPTSSPKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVL--THKQAQVPISS-EPPE 589
Query: 75 EETGE--RVQL-AHHFSEP 90
E E RVQL HH S P
Sbjct: 590 EGEKEDLRVQLKRHHPSSP 608
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 28.9 bits (63), Expect = 1.7
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 15 VSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPE 74
VS S S+ + + T TS+ + SSQ H + T A H+ +++ + + PPE
Sbjct: 446 VSSSPTSSPKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVL--THKQAQVPISS-EPPE 502
Query: 75 EETGE--RVQL-AHHFSEP 90
E E RVQL HH S P
Sbjct: 503 EGEKEDLRVQLKRHHPSSP 521
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 28.5 bits (62), Expect = 2.2
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 16/125 (12%)
Query: 29 TSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFS 88
+S S++ T + + S T+ TH EV+ S ++ P TG R +AH S
Sbjct: 1738 SSFSTAKTSTSLHSHTSSTHHP----------EVTSTSTTSITPNHTSTGTRTPVAHTTS 1787
Query: 89 EPEITL-IIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSP-----DTDVPLSSVEI 142
L F + GT + S G + P PS T VP S +
Sbjct: 1788 ATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQTTTTYPTPSHPHTTLPTHVPSFSTSL 1847
Query: 143 ENPET 147
P T
Sbjct: 1848 VTPST 1852
Score = 27.7 bits (60), Expect = 3.8
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 16 SISALSTTEVAMH-TSTSSSVTKSYISSQTNDTHKRDTYAATPRAH-EVSEISVRTVYPP 73
+I A +T A T T+S ++S S T T Y + H EV+ S + P
Sbjct: 1882 TIKATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPK 1941
Query: 74 EEETGERVQLAH 85
TG R +AH
Sbjct: 1942 HTSTGTRTPVAH 1953
Score = 26.6 bits (57), Expect = 8.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 28 HTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAH 85
H+S S++ T + + S T+ TH EV+ S T+ P T R +AH
Sbjct: 1513 HSSFSTNKTPTSLHSHTSSTHH----------PEVTPTSTTTITPNPTSTRTRTPVAH 1560
>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
Length = 818
Score = 28.5 bits (62), Expect = 2.2
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 17 ISALSTTEVAMHTSTSSSVTKSYIS---SQTNDT---HKRDTYAATPRAHEVSEISVRTV 70
+S + T VAM T S ++ I S ND + D+Y T R + + + V
Sbjct: 415 VSGYNITIVAMDTGPPSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKV 474
Query: 71 YPPEEETGERVQLAHHFSEPE 91
+ + + GE Q+ + P+
Sbjct: 475 HAEDLDLGENAQITYSLLPPK 495
>gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo
sapiens]
Length = 418
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 16 SISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVS----------EI 65
S SAL TT + + S+S++ ++S S+ N+ +++ + +S EI
Sbjct: 277 SSSALMTT-LTQNASSSAADSRSGRKSKNNNKSSSQQSSSSSSSSSLSSCSSSSTVVQEI 335
Query: 66 SVRTVYPPEEETGERVQLAHHFSEPEITL---IIFGVMAG 102
S +T PE ++ +V + +EP + + +G M G
Sbjct: 336 SQQTTVVPESDSNSQVDWTYDPNEPRYCICNQVSYGEMVG 375
>gi|4885069 ras homolog gene family, member E [Homo sapiens]
Length = 244
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 124 DVKPLPSPDTDVPLSSVEIENPETSD 149
+V+PL PD+D L +I PET D
Sbjct: 86 NVRPLSYPDSDAVLICFDISRPETLD 111
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 3.8
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 12 SEIVSISALST----TEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISV 67
+E+ S+ A T T A+H+ + V S D H + E S
Sbjct: 680 AEVQSLPAEETPIEETLAAVHSPPADDVPAEEASV---DKHSPPADLLLTEEFPIGEASA 736
Query: 68 RTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKP 127
PP E+T E L + S + + G+ A +G+++L + K S +K
Sbjct: 737 EVSPPPSEQTPEDEALVENVSTEFQSPQVAGIPAVKLGSVVLEGEAKFEEVSKINSVLKD 796
Query: 128 LPSPDTDVPLSSVEIEN 144
L S D ++EIE+
Sbjct: 797 L-SNTNDGQAPTLEIES 812
>gi|4885581 Rho family GTPase 2 [Homo sapiens]
Length = 227
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 124 DVKPLPSPDTDVPLSSVEIENPETSD 149
+V+PL PD+D L +I PET D
Sbjct: 70 NVRPLAYPDSDAVLICFDISRPETLD 95
>gi|169218211 PREDICTED: similar to plectin 1, partial [Homo
sapiens]
Length = 1369
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 748 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 807
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 808 L----QNAGDRLLREDHPARPTV 826
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 26.9 bits (58), Expect = 6.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 18 SALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEI--SVRTVYPPEE 75
S+L TTE A T+ T + ISS + + T +T +H S+ T P
Sbjct: 372 SSLPTTETATTPMTNLVTTTTEISSHSTPSFSSSTIYSTVTSHSTPRFTSSITTTETPSH 431
Query: 76 ET 77
T
Sbjct: 432 ST 433
>gi|11415038 solute carrier family 22 member 3 [Homo sapiens]
Length = 556
Score = 26.9 bits (58), Expect = 6.5
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 91 EITLIIFGVMAGVIGTILLISYGIRRL-IKKSPSDVKPLPSP 131
E+ LIIFG++A + G ++++ + + + ++ DV+ L SP
Sbjct: 497 ELPLIIFGILASICGGLVMLLPETKGIALPETVDDVEKLGSP 538
>gi|19557645 secretogranin III [Homo sapiens]
Length = 468
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 42 SQTNDTHKRDTYAATPRAHEVSEIS---VRTVYPPEEETGE 79
SQ H R+ A P +++E ++ YPPE + G+
Sbjct: 26 SQDKSLHNRELSAERPLNEQIAEAEEDKIKKTYPPENKPGQ 66
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 615 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 674
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 675 L----QNAGDRLLREDHPARPTV 693
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 619 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 678
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 679 L----QNAGDRLLREDHPARPTV 697
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 615 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 674
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 675 L----QNAGDRLLREDHPARPTV 693
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 583 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 642
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 643 L----QNAGDRLLREDHPARPTV 661
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 11 LSEIVSISALSTTEVA-MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRT 69
L + S A +T E+ ++ V + TN T K+++Y+A R E+ E ++
Sbjct: 752 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 811
Query: 70 VYPPEEETGERVQLAHHFSEPEI 92
+ + G+R+ H + P +
Sbjct: 812 L----QNAGDRLLREDHPARPTV 830
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,433,709
Number of Sequences: 37866
Number of extensions: 214157
Number of successful extensions: 624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 64
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.