Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KIAA1310 Sequence: fasta or formatted (878aa) NCBI GI: 169234787
Description:

hypothetical protein LOC55683 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {791aa} hypothetical protein LOC55683 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         77           2
 C cysteine            1.1         10           1
 D aspartate           4.0         35           2
 E glutamate           4.7         41           2
 F phenylalanine       1.7         15           1
 G glycine             6.9         61           2
 H histidine           2.7         24           2
 I isoleucine          3.8         33           2
 K lysine              5.2         46           4
 L leucine            10.7         94           3
 M methionine          1.9         17           1
 N asparagine          2.1         18           2
 P proline             8.3         73           4
 Q glutamine           4.3         38           1
 R arginine            5.5         48           2
 S serine             12.5        110           4
 T threonine           7.4         65           2
 V valine              6.9         61           3
 W tryptophan          0.9          8           1
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55683 isoform a 
KIAA1310              0.897   hypothetical protein LOC55683 isoform b 
MUC17                 0.025   mucin 17 
MUC4                  0.025   mucin 4 isoform a 
MUC5AC                0.024   mucin 5AC 
MUC5B                 0.022   mucin 5, subtype B, tracheobronchial 
MLL                   0.020   myeloid/lymphoid or mixed-lineage leukemia protein [...
KIAA0754              0.018   hypothetical protein LOC643314 
LOC100131514          0.018   PREDICTED: similar to hCG1747327, partial 
LOC100133756          0.018   PREDICTED: hypothetical protein, partial 
UBAP2L                0.018   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.018   ubiquitin associated protein 2-like isoform b [Homo...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
MUC12                 0.017   PREDICTED: mucin 12 
MUC12                 0.017   PREDICTED: mucin 12, cell surface associated 
SRCAP                 0.017   Snf2-related CBP activator protein 
LOC100130716          0.017   PREDICTED: similar to mucin 11 
LOC100130716          0.017   PREDICTED: similar to Mucin-12 
NUP214                0.016   nucleoporin 214kDa 
C11orf24              0.016   hypothetical protein LOC53838 
PODXL                 0.015   podocalyxin-like isoform 1 precursor 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
MUC12                 0.015   PREDICTED: mucin 12 
SMTN                  0.015   smoothelin isoform b 
SMTN                  0.015   smoothelin isoform c 
OTOG                  0.015   PREDICTED: otogelin isoform 1 
OTOG                  0.015   PREDICTED: otogelin isoform 2 
OTOG                  0.015   PREDICTED: otogelin isoform 2 
OTOG                  0.015   PREDICTED: otogelin isoform 1 
MUC16                 0.014   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press