Guide to the Human Genome
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Name: SCG3 Sequence: fasta or formatted (468aa) NCBI GI: 19557645
Description:

secretogranin III

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           2
 C cysteine            0.0          0           0
 D aspartate           7.9         37           2
 E glutamate          11.8         55           2
 F phenylalanine       2.4         11           1
 G glycine             4.7         22           2
 H histidine           1.5          7           1
 I isoleucine          6.2         29           1
 K lysine             12.0         56           2
 L leucine             9.4         44           2
 M methionine          1.7          8           2
 N asparagine          6.2         29           2
 P proline             4.3         20           2
 Q glutamine           3.0         14           1
 R arginine            2.6         12           2
 S serine              6.6         31           2
 T threonine           6.4         30           1
 V valine              3.4         16           1
 W tryptophan          0.6          3           1
 Y tyrosine            3.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secretogranin III 
CNTLN                 0.021   centlein isoform 1 
ANKRD12               0.018   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.018   ankyrin repeat domain 12 isoform 1 
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CENPE                 0.017   centromere protein E 
SLK                   0.017   serine/threonine kinase 2 
RBM19                 0.016   RNA binding motif protein 19 
RBM19                 0.016   RNA binding motif protein 19 
RBM19                 0.016   RNA binding motif protein 19 
GOLGB1                0.016   golgi autoantigen, golgin subfamily b, macrogolgin ...
CYLC1                 0.014   cylicin, basic protein of sperm head cytoskeleton 1...
MLLT3                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithor...
ATAD5                 0.013   ATPase family, AAA domain containing 5 
IQCG                  0.013   IQ motif containing G 
IQCG                  0.013   IQ motif containing G 
PPL                   0.013   periplakin 
KTN1                  0.013   kinectin 1 isoform b 
AP3B1                 0.011   adaptor-related protein complex 3, beta 1 subunit [H...
CCAR1                 0.011   cell-cycle and apoptosis regulatory protein 1 
ROCK2                 0.011   Rho-associated, coiled-coil containing protein kinas...
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
MYH9                  0.011   myosin, heavy polypeptide 9, non-muscle 
MYH8                  0.011   myosin, heavy chain 8, skeletal muscle, perinatal [...
CCDC147               0.011   coiled-coil domain containing 147 
ARHGAP21              0.011   Rho GTPase activating protein 21 
GCC2                  0.010   GRIP and coiled-coil domain-containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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