Guide to the Human Genome
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Name: GYPA Sequence: fasta or formatted (150aa) NCBI GI: 75813628
Description:

glycophorin A precursor

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          7           2
 C cysteine            0.0          0           0
 D aspartate           4.0          6           1
 E glutamate           8.7         13           3
 F phenylalanine       2.0          3           1
 G glycine             4.0          6           1
 H histidine           3.3          5           2
 I isoleucine         10.0         15           2
 K lysine              4.0          6           2
 L leucine             7.3         11           3
 M methionine          2.0          3           1
 N asparagine          1.3          2           1
 P proline             6.7         10           2
 Q glutamine           2.0          3           1
 R arginine            4.0          6           2
 S serine             14.0         21           3
 T threonine          10.0         15           2
 V valine              8.7         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycophorin A precursor 
GYPB                  0.342   glycophorin B precursor 
GYPE                  0.207   glycophorin E precursor 
GYPE                  0.207   glycophorin E precursor 
FAM188B               0.026   hypothetical protein LOC84182 
KIAA1486              0.026   hypothetical protein LOC57624 
LOC100293817          0.026   PREDICTED: similar to hCG1811893 
LOC100131251          0.026   PREDICTED: hypothetical protein 
LOC100131251          0.026   PREDICTED: hypothetical protein 
MUC16                 0.023   mucin 16 
DOCK4                 0.019   dedicator of cytokinesis 4 
ACE2                  0.019   angiotensin I converting enzyme 2 precursor 
SPEN                  0.019   spen homolog, transcriptional regulator 
KIAA1310              0.015   hypothetical protein LOC55683 isoform a 
KIAA1310              0.015   hypothetical protein LOC55683 isoform b 
MUC6                  0.011   mucin 6, gastric 
PCDHB1                0.011   protocadherin beta 1 precursor 
ING3                  0.011   inhibitor of growth family, member 3 isoform 1 [Homo...
RND3                  0.011   ras homolog gene family, member E 
FSCB                  0.011   fibrous sheath CABYR binding protein 
RND2                  0.011   Rho family GTPase 2 
LOC652460             0.008   PREDICTED: similar to plectin 1, partial 
MUC3A                 0.008   PREDICTED: mucin 3A, intestinal 
SLC22A3               0.008   solute carrier family 22 member 3 
SCG3                  0.008   secretogranin III 
PLEC1                 0.008   plectin 1 isoform 11 
PLEC1                 0.008   plectin 1 isoform 10 
PLEC1                 0.008   plectin 1 isoform 8 
PLEC1                 0.008   plectin 1 isoform 7 
PLEC1                 0.008   plectin 1 isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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