Guide to the Human Genome
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Name: LOC652460 Sequence: fasta or formatted (1369aa) NCBI GI: 169218211
Description:

PREDICTED: similar to plectin 1, partial

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        120           3
 C cysteine            1.2         17           3
 D aspartate           4.8         66           2
 E glutamate           9.7        133           4
 F phenylalanine       2.0         28           2
 G glycine             4.5         62           2
 H histidine           3.1         42           2
 I isoleucine          2.8         39           2
 K lysine              5.0         68           2
 L leucine            13.1        179           4
 M methionine          1.8         25           1
 N asparagine          2.0         27           1
 P proline             4.7         64           3
 Q glutamine           7.9        108           2
 R arginine            9.4        129           3
 S serine              5.4         74           3
 T threonine           3.6         49           2
 V valine              6.4         87           2
 W tryptophan          1.7         23           1
 Y tyrosine            2.1         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to plectin 1, partial 
PLEC1                 0.994   plectin 1 isoform 6 
PLEC1                 0.868   plectin 1 isoform 1 
PLEC1                 0.868   plectin 1 isoform 11 
PLEC1                 0.868   plectin 1 isoform 10 
PLEC1                 0.868   plectin 1 isoform 8 
PLEC1                 0.868   plectin 1 isoform 7 
PLEC1                 0.868   plectin 1 isoform 3 
PLEC1                 0.868   plectin 1 isoform 2 
MACF1                 0.415   microfilament and actin filament cross-linker protei...
DST                   0.238   dystonin isoform 4 
DST                   0.238   dystonin isoform 3 
DST                   0.238   dystonin isoform 2 
DST                   0.238   dystonin isoform 1 
DST                   0.238   dystonin isoform 1eB precursor 
DST                   0.238   dystonin isoform 1eA precursor 
DST                   0.238   dystonin isoform 1e precursor 
DSP                   0.161   desmoplakin isoform II 
DSP                   0.161   desmoplakin isoform I 
SPTBN2                0.121   spectrin, beta, non-erythrocytic 2 
SPTBN1                0.116   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.116   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTB                  0.116   spectrin beta isoform a 
SPTB                  0.116   spectrin beta isoform b 
SPTBN4                0.102   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN5                0.085   spectrin, beta, non-erythrocytic 5 
ACTN4                 0.082   actinin, alpha 4 
ACTN3                 0.082   actinin, alpha 3 
PPL                   0.081   periplakin 
ACTN1                 0.079   actinin, alpha 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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