Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GYPE Sequence: fasta or formatted (78aa) NCBI GI: 149408157
Description:

glycophorin E precursor

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt mRNA [78aa] glycophorin E precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          4           1
 C cysteine            1.3          1           1
 D aspartate           0.0          0           0
 E glutamate           1.3          1           1
 F phenylalanine       2.6          2           1
 G glycine             6.4          5           1
 H histidine           1.3          1           1
 I isoleucine         15.4         12           2
 K lysine              2.6          2           1
 L leucine             7.7          6           3
 M methionine          6.4          5           1
 N asparagine          2.6          2           1
 P proline             0.0          0           0
 Q glutamine           1.3          1           1
 R arginine            2.6          2           1
 S serine             16.7         13           3
 T threonine           9.0          7           2
 V valine             11.5          9           3
 W tryptophan          2.6          2           2
 Y tyrosine            3.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycophorin E precursor 
GYPE                  1.000   glycophorin E precursor 
GYPB                  0.528   glycophorin B precursor 
GYPA                  0.440   glycophorin A precursor 
LPAR4                 0.032   lysophosphatidic acid receptor 4 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC100294501          0.008   PREDICTED: hypothetical protein 
LOC100294249          0.008   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.008   PREDICTED: hypothetical protein 
LOC100294204          0.008   PREDICTED: hypothetical protein 
LOC100294136          0.008   PREDICTED: hypothetical protein 
LOC100294091          0.008   PREDICTED: hypothetical protein 
LOC730401             0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press