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Search of human proteins with 74275352
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74275352 translocator protein isoform PBR-S [Homo sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74275352 translocator protein isoform PBR-S [Homo sapiens] 227 2e-60
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 32 0.082
gi|7706501 WW domain binding protein 11 [Homo sapiens] 32 0.11
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 31 0.24
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 31 0.24
gi|153792074 proline rich 12 [Homo sapiens] 30 0.41
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 30 0.53
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 30 0.53
gi|23397672 homeobox D4 [Homo sapiens] 30 0.53
gi|47157315 Janus kinase 3 [Homo sapiens] 30 0.53
gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo ... 30 0.53
gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens] 30 0.53
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 30 0.53
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|9994201 carboxypeptidase X, member 1 precursor [Homo sapiens] 29 0.70
gi|187960042 selectin E precursor [Homo sapiens] 29 0.91
gi|89886480 zinedin isoform 2 [Homo sapiens] 29 0.91
gi|89886477 zinedin isoform 1 [Homo sapiens] 29 0.91
gi|142976884 phospholipase A2, group III precursor [Homo sapiens] 29 0.91
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 29 0.91
gi|238859653 pleckstrin homology domain containing family A memb... 28 1.2
gi|238859651 pleckstrin homology domain containing family A memb... 28 1.2
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 28 1.2
gi|113414915 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 28 1.2
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 28 1.2
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 28 1.2
>gi|74275352 translocator protein isoform PBR-S [Homo sapiens]
Length = 102
Score = 227 bits (578), Expect = 2e-60
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MAPHLLWCPTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLR 60
MAPHLLWCPTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLR
Sbjct: 1 MAPHLLWCPTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLR 60
Query: 61 MAGQPWLAWGTAAARVSARPTRDCSCTSRCHHACDVVAVTLS 102
MAGQPWLAWGTAAARVSARPTRDCSCTSRCHHACDVVAVTLS
Sbjct: 61 MAGQPWLAWGTAAARVSARPTRDCSCTSRCHHACDVVAVTLS 102
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 32.3 bits (72), Expect = 0.082
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPAL 44
P+ G G GG G GGGS G PG P+G P A+
Sbjct: 71 PSPGTGGGGGAGG--GGGSSQAGGAPGPPSGGPGAV 104
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/51 (39%), Positives = 21/51 (41%)
Query: 15 LGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLRMAGQP 65
LG PA GL PG P G PP L PG+ GL L G P
Sbjct: 413 LGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPP 463
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAG 51
P+ G GLGG G GGGS G EP P PG G
Sbjct: 98 PSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRG 140
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAG 51
P+ G GLGG G GGGS G EP P PG G
Sbjct: 98 PSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRG 140
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 0.41
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 12 GLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHT------QLLRMAGQP 65
G G GG A Y G P P+G PP PGLA ++ QL + G+P
Sbjct: 458 GQGFGGGQAQDLSKAPSYSGGPPQPPSGPPP----PGLATCQSYSPDQLQGQLYGVQGEP 513
Query: 66 WLAWGTAAARVSARPTRDCSCTSRCHHA 93
+ AA PT S + H+
Sbjct: 514 YPG---PAAHSQGLPTASPSLSYSTGHS 538
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 12 GLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAG 51
G G+ SP+ W GG G P + PP +P P AG
Sbjct: 347 GFGVDQSPSAAWMGGF---GAQPPQGQAPPPVIPPPNQAG 383
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 12 GLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAG 51
G G+ SP+ W GG G P + PP +P P AG
Sbjct: 330 GFGVDQSPSAAWMGGF---GAQPPQGQAPPPVIPPPNQAG 366
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQ 57
P + L G G G HY PGEP PPA P L G ++Q
Sbjct: 69 PGSALPARGHGQEPGGPGGHYAA--PGEPCPAPPAPPPAPLPGARAYSQ 115
>gi|47157315 Janus kinase 3 [Homo sapiens]
Length = 1124
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 36 EPAGRPPA--LPLPGLAGLHDHTQLLRMAGQPWLAW 69
+PAG + LPG G HD LLR+AG +AW
Sbjct: 246 DPAGAAETFHVGLPGALGGHDGLGLLRVAGDGGIAW 281
>gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 2 APHLLWCPTNGLGLGGSPAGQWGGG---------SHYRGLVPGEPAGRPPALPL 46
APH+ P + +G P G GG +R ++PG P RPPA P+
Sbjct: 94 APHMRGPPMMPM-MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPM 146
>gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]
Length = 179
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 17 GSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHT 56
G G WG GS +RG PG RPP+ P G H HT
Sbjct: 15 GPGGGGWGSGSSFRG-TPGGGGPRPPS-PRDGYGSPH-HT 51
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLRMAGQP 65
P G G GG P G GGG PG G P L G A H H L P
Sbjct: 153 PGGGGGPGGGPGGGGGGG-------PGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHP 202
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 17 GSPAGQWGGGSHYRGLVPGE---PAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAA 73
G+P W G G GE P G P G G+ + + ++ +L+W ++
Sbjct: 45 GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLS---FLSWSSSR 101
Query: 74 ARVSARPTRDCSCTSR 89
RV AR + +C+ R
Sbjct: 102 CRVPARSSAASACSCR 117
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 17 GSPAGQWGGGSHYRGLVPGE---PAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAA 73
G+P W G G GE P G P G G+ + + ++ +L+W ++
Sbjct: 45 GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLS---FLSWSSSR 101
Query: 74 ARVSARPTRDCSCTSR 89
RV AR + +C+ R
Sbjct: 102 CRVPARSSAASACSCR 117
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 17 GSPAGQWGGGSHYRGLVPGE---PAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAA 73
G+P W G G GE P G P G G+ + + ++ +L+W ++
Sbjct: 45 GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLS---FLSWSSSR 101
Query: 74 ARVSARPTRDCSCTSR 89
RV AR + +C+ R
Sbjct: 102 CRVPARSSAASACSCR 117
>gi|9994201 carboxypeptidase X, member 1 precursor [Homo sapiens]
Length = 734
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 23 WGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAA--ARVSARP 80
WG +H G+ PA P P+ L + +R+ Q WL G A + A P
Sbjct: 216 WGSRNHSSGMDAVFPANSDPETPVLNLLPEPQVARFIRLLPQTWLQGGAPCLRAEILACP 275
Query: 81 TRD 83
D
Sbjct: 276 VSD 278
>gi|187960042 selectin E precursor [Homo sapiens]
Length = 610
Score = 28.9 bits (63), Expect = 0.91
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 8 CPTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLH-DHTQLLRMAGQPW 66
CP G L GS A G H+ GL+P A P +P +AGL LL +A P+
Sbjct: 520 CP-EGWTLNGSAARTCGATGHWSGLLPTCEA--PTESNIPLVAGLSAAGLSLLTLA--PF 574
Query: 67 LAWGTAAARVSARPTRDCSCTS 88
L W R + + SC S
Sbjct: 575 LLWLRKCLRKAKKFVPASSCQS 596
>gi|89886480 zinedin isoform 2 [Homo sapiens]
Length = 760
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDH 55
P + G PAG+ GGG G PG AG P L LPG+ H
Sbjct: 33 PVSAPAPGPGPAGKGGGG----GGSPGPTAG-PEPLSLPGILHFIQH 74
>gi|89886477 zinedin isoform 1 [Homo sapiens]
Length = 753
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLPGLAGLHDH 55
P + G PAG+ GGG G PG AG P L LPG+ H
Sbjct: 33 PVSAPAPGPGPAGKGGGG----GGSPGPTAG-PEPLSLPGILHFIQH 74
>gi|142976884 phospholipase A2, group III precursor [Homo sapiens]
Length = 509
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 12 GLGLGGSPAGQWGGGS-HYRGLVPGEPAG 39
G+ LGGSPA +W S H VPG P G
Sbjct: 15 GVALGGSPALRWYRTSCHLTKAVPGNPLG 43
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPP----ALPLPGLAG 51
P G+ G+P G +GG + PG P G+PP PGL G
Sbjct: 67 PNPGMFPSGTPGGPYGGAA------PGGPYGQPPPSSYGAQQPGLYG 107
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 37 PAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAAARVSARPT 81
PA RPPA HT L R+ +P L WG +S PT
Sbjct: 252 PARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPT 296
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 37 PAGRPPALPLPGLAGLHDHTQLLRMAGQPWLAWGTAAARVSARPT 81
PA RPPA HT L R+ +P L WG +S PT
Sbjct: 252 PARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPT 296
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPL 46
P G+ GG G +R ++PG P RPPA P+
Sbjct: 109 PPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPM 146
>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 8 CPTNGLGLGGSPAGQWGGGSH---YRGLVPGEPAGRPPALPLPGLA 50
CP GG PAG GG+ G + G PA P PGL+
Sbjct: 38 CPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLS 83
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPL 46
P G+ GG G +R ++PG P RPPA P+
Sbjct: 109 PPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPM 146
>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 8 CPTNGLGLGGSPAGQWGGGSH---YRGLVPGEPAGRPPALPLPGLA 50
CP GG PAG GG+ G + G PA P PGL+
Sbjct: 38 CPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLS 83
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLP 47
P+ LG G G YR L PG P G PP+ P
Sbjct: 286 PSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAP 324
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 9 PTNGLGLGGSPAGQWGGGSHYRGLVPGEPAGRPPALPLP 47
P+ LG G G YR L PG P G PP+ P
Sbjct: 291 PSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAP 329
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,257,125
Number of Sequences: 37866
Number of extensions: 300080
Number of successful extensions: 1543
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 185
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.