Guide to the Human Genome
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Name: C7orf11 Sequence: fasta or formatted (179aa) NCBI GI: 20162566
Description:

chromosome 7 open reading frame 11

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          2           1
 C cysteine            0.6          1           1
 D aspartate           1.7          3           1
 E glutamate           2.8          5           1
 F phenylalanine       5.0          9           1
 G glycine            18.4         33           4
 H histidine           2.8          5           2
 I isoleucine          0.6          1           1
 K lysine              2.2          4           2
 L leucine             1.7          3           1
 M methionine          1.7          3           1
 N asparagine          2.2          4           1
 P proline            16.2         29           2
 Q glutamine           6.7         12           3
 R arginine            8.4         15           1
 S serine             14.0         25           2
 T threonine           5.0          9           1
 V valine              2.2          4           2
 W tryptophan          1.1          2           1
 Y tyrosine            5.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 7 open reading frame 11 
PEF1                  0.097   penta-EF-hand domain containing 1 
PRB1                  0.078   proline-rich protein BstNI subfamily 1 isoform 2 pre...
FLJ37078              0.067   hypothetical protein LOC222183 
SFPQ                  0.067   splicing factor proline/glutamine rich (polypyrimidin...
ANXA7                 0.067   annexin VII isoform 2 
MAPK1IP1L             0.065   MAPK-interacting and spindle-stabilizing protein [Ho...
COL10A1               0.065   type X collagen alpha 1 precursor 
PRB2                  0.065   proline-rich protein BstNI subfamily 2 
PRB1                  0.065   proline-rich protein BstNI subfamily 1 isoform 3 pre...
ARID1A                0.062   AT rich interactive domain 1A isoform a 
ARID1A                0.062   AT rich interactive domain 1A isoform b 
SSBP3                 0.062   single stranded DNA binding protein 3 isoform a [Hom...
COL3A1                0.062   collagen type III alpha 1 preproprotein 
SF3B4                 0.062   splicing factor 3b, subunit 4 
PRB4                  0.062   proline-rich protein BstNI subfamily 4 precursor [Ho...
MN1                   0.059   meningioma  1 
ANXA7                 0.059   annexin VII isoform 1 
PRB1                  0.059   proline-rich protein BstNI subfamily 1 isoform 1 pre...
KRT9                  0.059   keratin 9 
KRT10                 0.059   keratin 10 
COL1A1                0.057   alpha 1 type I collagen preproprotein 
PPP1R10               0.057   protein phosphatase 1, regulatory subunit 10 
SSBP3                 0.057   single stranded DNA binding protein 3 isoform b [Hom...
SSBP3                 0.057   single stranded DNA binding protein 3 isoform c [Hom...
GRINA                 0.057   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.057   glutamate receptor, ionotropic, N-methyl D-aspartate...
NACA                  0.057   nascent polypeptide-associated complex alpha subuni...
SF1                   0.054   splicing factor 1 isoform 3 
SF1                   0.054   splicing factor 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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