Guide to the Human Genome
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Name: CASC5 Sequence: fasta or formatted (2342aa) NCBI GI: 74048514
Description:

cancer susceptibility candidate 5 isoform 1

Referenced in:

Centromere Proteins

Other entries for this name:
alt prot [2316aa] cancer susceptibility candidate 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         96           3
 C cysteine            2.2         52           1
 D aspartate           6.4        150           2
 E glutamate           8.7        204           4
 F phenylalanine       3.3         78           2
 G glycine             3.3         78           2
 H histidine           2.6         61           2
 I isoleucine          6.3        148           2
 K lysine              8.1        190           2
 L leucine             8.5        198           3
 M methionine          2.4         56           2
 N asparagine          7.1        166           3
 P proline             4.3        101           2
 Q glutamine           5.1        120           2
 R arginine            3.4         79           3
 S serine              9.3        217           3
 T threonine           7.3        170           2
 V valine              5.0        118           2
 W tryptophan          0.6         13           1
 Y tyrosine            2.0         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer susceptibility candidate 5 isoform 1 
CASC5                 0.985   cancer susceptibility candidate 5 isoform 2 
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
MYH8                  0.006   myosin, heavy chain 8, skeletal muscle, perinatal [...
KTN1                  0.006   kinectin 1 isoform b 
KTN1                  0.006   kinectin 1 isoform c 
CCDC88A               0.006   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.006   coiled-coil domain containing 88A isoform 1 
MYH4                  0.006   myosin, heavy polypeptide 4, skeletal muscle 
MYH1                  0.006   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.005   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.005   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH3                  0.005   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH9                  0.005   myosin, heavy polypeptide 9, non-muscle 
CENPE                 0.005   centromere protein E 
FAM184A               0.005   hypothetical protein LOC79632 isoform 1 
SYCP1                 0.005   synaptonemal complex protein 1 
LOC283767             0.005   golgi autoantigen, golgin subfamily a-like 
NEXN                  0.005   nexilin (F actin binding protein) 
CEP250                0.005   centrosomal protein 2 
LOC400352             0.005   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.005   PREDICTED: similar to Putative golgin subfamily A m...
KIF5C                 0.005   kinesin family member 5C 
KIF20B                0.004   M-phase phosphoprotein 1 
CEP110                0.004   centrosomal protein 110kDa 
TRIP11                0.004   thyroid hormone receptor interactor 11 
CENPF                 0.004   centromere protein F 
CCDC18                0.004   sarcoma antigen NY-SAR-41 
C6orf204              0.004   chromosome 6 open reading frame 204 isoform a [Homo...
LOC440243             0.004   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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