Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 71274178
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71274178 developing brain homeobox 1 [Homo sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71274178 developing brain homeobox 1 [Homo sapiens] 778 0.0
gi|116174748 developing brain homeobox 2 [Homo sapiens] 127 1e-29
gi|11386181 H2.0-like homeobox [Homo sapiens] 87 3e-17
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 80 4e-15
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 63 4e-10
gi|4885185 distal-less homeobox 3 [Homo sapiens] 60 3e-09
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 59 7e-09
gi|4885187 distal-less homeobox 5 [Homo sapiens] 59 1e-08
gi|89257348 homeo box HB9 [Homo sapiens] 57 4e-08
gi|4504465 homeobox B2 [Homo sapiens] 56 5e-08
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 56 6e-08
gi|147901462 brain specific homeobox [Homo sapiens] 56 6e-08
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 55 8e-08
gi|24497513 homeobox A3 isoform a [Homo sapiens] 52 9e-07
gi|13562112 homeobox A3 isoform a [Homo sapiens] 52 9e-07
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 52 9e-07
gi|13273317 homeobox B8 [Homo sapiens] 52 1e-06
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 50 3e-06
gi|4758168 distal-less homeobox 2 [Homo sapiens] 50 3e-06
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 50 3e-06
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 49 8e-06
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 48 2e-05
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 47 2e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 47 3e-05
gi|157426823 NK2 homeobox 4 [Homo sapiens] 46 5e-05
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 46 6e-05
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 46 6e-05
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 45 1e-04
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 45 1e-04
gi|121114296 caudal type homeobox 1 [Homo sapiens] 45 1e-04
>gi|71274178 developing brain homeobox 1 [Homo sapiens]
Length = 382
Score = 778 bits (2008), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT 60
MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT
Sbjct: 1 MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT 60
Query: 61 ASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGP 120
ASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGP
Sbjct: 61 ASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGP 120
Query: 121 RTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRR 180
RTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRR
Sbjct: 121 RTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRR 180
Query: 181 GMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRP 240
GMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRP
Sbjct: 181 GMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRP 240
Query: 241 RASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNP 300
RASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNP
Sbjct: 241 RASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNP 300
Query: 301 HPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGK 360
HPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGK
Sbjct: 301 HPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGK 360
Query: 361 PSDFSDSEEEEEGEEQEEITVS 382
PSDFSDSEEEEEGEEQEEITVS
Sbjct: 361 PSDFSDSEEEEEGEEQEEITVS 382
>gi|116174748 developing brain homeobox 2 [Homo sapiens]
Length = 339
Score = 127 bits (320), Expect = 1e-29
Identities = 122/361 (33%), Positives = 156/361 (43%), Gaps = 77/361 (21%)
Query: 2 MFPGLLAPPAG-YPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT 60
M P +A AG Y ++ + L LP + G SFL+E+L+R+ P PR P
Sbjct: 1 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLG-KSFLIENLLRVGGAPT--PRLQPP 57
Query: 61 ASMSP------------PRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFL 108
A P P +P L A++ SP SP++++ L
Sbjct: 58 APHDPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARL 117
Query: 109 KFGV----NAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPI 164
+ + P LL S PP F GS + S+ FP S++P+
Sbjct: 118 PGRAPGDRDCTFQPSAPAPSKPFLL-STPP--FYSACCGGSCRRPASSTAFPREESMLPL 174
Query: 165 PGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQ 224
S K RRG+LRRAVFS+ QRKALEKMFQKQKYISK DRKKLA LGLK+S
Sbjct: 175 LTQDS-----NSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKES- 228
Query: 225 DTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELL 284
QVKIWFQNRRMKWRNSKE+E+L
Sbjct: 229 --------------------------------------QVKIWFQNRRMKWRNSKEKEVL 250
Query: 285 SSG-----GCREQTLPTKL----NPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSD 335
S+ G +E L +P P + DV Q+ E P PS RL +S
Sbjct: 251 SNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSP-EPSERLIQESSGA 309
Query: 336 P 336
P
Sbjct: 310 P 310
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 86.7 bits (213), Expect = 3e-17
Identities = 100/346 (28%), Positives = 129/346 (37%), Gaps = 84/346 (24%)
Query: 15 SLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPP--RQGAPT 72
S LRPTP + P + + F S L P + P PP R GA
Sbjct: 91 SPLRPTPVVA-PSEVPAGFPQRLSPL-SAAYHHHHPQQQQQQQQPQQQQPPPPPRAGA-- 146
Query: 73 ALTDTGASDLGSPGPGSRRGGSPPTAFS-PASETTFLKFGVNAILSS--GPRTETSPALL 129
L P G+R +P + S PA + LKFG++ ILS+ P+ + L
Sbjct: 147 ---------LQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLR 197
Query: 130 QSVPPKTFAFP-------------YFEGSFQPFIRSSYF-------PASSSVVPIPGTFS 169
T P F S P +S P +S TF
Sbjct: 198 DLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINEASAILSPLNSNPRNSVQHQFQDTFP 257
Query: 170 WPLAARGKP-------RRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKD 222
P A K R+ RAVFS++QRK LEK F+ QKY++KPDRK+LAA LGL D
Sbjct: 258 GPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTD 317
Query: 223 SQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERE 282
+ QVK+WFQNRRMKWR+SKE +
Sbjct: 318 A---------------------------------------QVKVWFQNRRMKWRHSKEAQ 338
Query: 283 LLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRL 328
P+ P D + +E E E S S L
Sbjct: 339 AQKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDSESL 384
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 79.7 bits (195), Expect = 4e-15
Identities = 80/266 (30%), Positives = 108/266 (40%), Gaps = 77/266 (28%)
Query: 85 PGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEG 144
PGP +G +P A + A E LKFGV A+L++ P + A+L++ F FP
Sbjct: 39 PGP---KGAAPAAAAAAAGE--LLKFGVQALLAARP-FHSHLAVLKAEQAAVFKFP---- 88
Query: 145 SFQPFIRSSYFPASSSVVP-IPGTFSWP-----LAARGK------------PRRGMLRRA 186
P S A + P +PG P L RGK ++G R
Sbjct: 89 -LAPLGCSGLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGTKAKKGRRSRT 147
Query: 187 VFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGA 246
VF+++Q LEK F+KQKY+S PDR LA LGL
Sbjct: 148 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQ------------------------ 183
Query: 247 PDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLP---TKLNPHPD 303
QVK W+QNRRMKW+ + +L GG T P K N P
Sbjct: 184 ---------------LQVKTWYQNRRMKWK----KIVLQGGGLESPTKPKGRPKKNSIPT 224
Query: 304 LSDVGQKGPGNEEEE--EGPGSPSHR 327
+ ++ + E+ E PG PS R
Sbjct: 225 SEQLTEQERAKDAEKPAEVPGEPSDR 250
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 63.2 bits (152), Expect = 4e-10
Identities = 55/212 (25%), Positives = 76/212 (35%), Gaps = 48/212 (22%)
Query: 152 SSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDR 211
S+ P ++ P + KPRR R +F+++Q LEK FQKQKY+S PDR
Sbjct: 107 SAEAPGGEALASSESETEQPTPRQKKPRRS---RTIFTELQLMGLEKKFQKQKYLSTPDR 163
Query: 212 KKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNR 271
LA LGL QVK W+QNR
Sbjct: 164 LDLAQSLGLTQ---------------------------------------LQVKTWYQNR 184
Query: 272 RMKW-----RNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSH 326
RMKW + +E G ++ ++PT + + + G E+ E G
Sbjct: 185 RMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAE-EKMNSQAQGQEQLEPSQGQEEL 243
Query: 327 RLAYHASSDPQHLRDPRLPGPLPPSPAHSSSP 358
A + L P P P SS P
Sbjct: 244 CEAQEPKARDVPLEMAEPPDPPQELPIPSSEP 275
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 60.5 bits (145), Expect = 3e-09
Identities = 58/203 (28%), Positives = 80/203 (39%), Gaps = 63/203 (31%)
Query: 176 GKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD 235
GKP++ R ++S Q AL++ FQK +Y++ P+R +LAA+LGL +
Sbjct: 124 GKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQT------------ 171
Query: 236 STPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRN-SKEREL-LSSGGCREQT 293
QVKIWFQNRR K++ K E+ L +
Sbjct: 172 ---------------------------QVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDS 204
Query: 294 LPTKLNPHPDLSDVGQKG-PGNEEEEEGPGSPSHRLAYHASSDPQHLRDP--------RL 344
+ P P L D P + P P S+ P +L DP L
Sbjct: 205 MACNSPPSPALWDTSSHSTPAPARSQLPPPLP-------YSASPSYLDDPTNSWYHAQNL 257
Query: 345 PGP----LPPSPA--HSSSPGKP 361
GP PP PA H +SPG P
Sbjct: 258 SGPHLQQQPPQPATLHHASPGPP 280
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 58.9 bits (141), Expect = 7e-09
Identities = 69/248 (27%), Positives = 94/248 (37%), Gaps = 72/248 (29%)
Query: 64 SPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPT--------------AFSPASETTFLK 109
SP + AP GAS LG P PG R G + P+ A S + +
Sbjct: 26 SPDQDSAPAPRGPDGASYLGGP-PGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAP 84
Query: 110 FGVNAILSSGPRTETSPALLQSVPPKT-----------FAFPYFEGSFQPFIRSSYFPAS 158
GV + + P P L S P FP+ E S + F++ F A+
Sbjct: 85 AGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESS-RRFVKDR-FTAA 142
Query: 159 SSVVPIPGT--FSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAA 216
+++ P T P R P+R R + FS VQ LEK F +QKY++ +R LA
Sbjct: 143 AALTPFTVTRRIGHPYQNRTPPKRKKPRTS-FSRVQICELEKRFHRQKYLASAERAALAK 201
Query: 217 KLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWR 276
L + D+ QVK WFQNRR KWR
Sbjct: 202 SLKMTDA---------------------------------------QVKTWFQNRRTKWR 222
Query: 277 --NSKERE 282
++ERE
Sbjct: 223 RQTAEERE 230
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 58.5 bits (140), Expect = 1e-08
Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 65/280 (23%)
Query: 60 TASMSPPRQGAPTALTDTGA--SDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILS 117
+A+M P Q +PT L ++ A SD SP G+ G PT+ S ++ + +
Sbjct: 24 SAAMHHPSQESPT-LPESSATDSDYYSPTGGAPHGYCSPTSASYGKALNPYQYQYHGVNG 82
Query: 118 SGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRS-SYFPASSSVVPIPGTFSWPLAARG 176
S S P K +A + S+ + + + P++++ T G
Sbjct: 83 SAG----------SYPAKAYADYSYASSYHQYGGAYNRVPSATNQPEKEVTEPEVRMVNG 132
Query: 177 KPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDS 236
KP++ R ++S Q AL++ FQK +Y++ P+R +LAA LGL +
Sbjct: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQT------------- 179
Query: 237 TPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPT 296
QVKIWFQN+R SK ++++ +G + P+
Sbjct: 180 --------------------------QVKIWFQNKR-----SKIKKIMKNGEMPPEHSPS 208
Query: 297 KLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDP 336
+P + P + E GS S L++H + P
Sbjct: 209 SSDP------MACNSPQSPAVWEPQGS-SRSLSHHPHAHP 241
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 56.6 bits (135), Expect = 4e-08
Identities = 80/323 (24%), Positives = 116/323 (35%), Gaps = 93/323 (28%)
Query: 70 APTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLK--FGVNAILSSGPRTETSPA 127
A A A+ G G GG+ A PA + +G +A ++ PA
Sbjct: 122 AAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPA 181
Query: 128 LLQSVPPKTFAFPYFE--------GSFQPFIRSSYFPASSSVVPIPGTFSWPLAAR---- 175
L S P A P G+FQ + AS++ + +P + A+
Sbjct: 182 LSYSYPQVQGAHPAHPADPIKLGAGTFQ---LDQWLRASTAGMILPKMPDFNSQAQSNLL 238
Query: 176 GKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD 235
GK RR R F+ Q LE F+ KY+S+P R ++A L L ++Q
Sbjct: 239 GKCRRP---RTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQ----------- 284
Query: 236 STPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLP 295
VKIWFQNRRMKW+ SK+ + ++ +Q
Sbjct: 285 ----------------------------VKIWFQNRRMKWKRSKKAKEQAAQEAEKQK-- 314
Query: 296 TKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHS 355
G G G EE PG+ L G PP+P
Sbjct: 315 ---------GGGGGAGKGGAEE---PGA------------------EELLG--PPAPGDK 342
Query: 356 SSPGKPSDFSDSEEEEEGEEQEE 378
S + D DS+ EE+ +E +E
Sbjct: 343 GSGRRLRDLRDSDPEEDEDEDDE 365
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 56.2 bits (134), Expect = 5e-08
Identities = 75/285 (26%), Positives = 100/285 (35%), Gaps = 81/285 (28%)
Query: 101 PASETTFLKFGVNAILSSGPRT----ETSPALLQSVPPKTFAFPYF-EGSFQPFIRSSYF 155
P E TF A PR+ E PAL PP A P E + +S+
Sbjct: 47 PPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKK 106
Query: 156 PASSSVVPIPGTFSWPLAARGKPRRGM-----------LRRAVFSDVQRKALEKMFQKQK 204
P+ S+ P P + P + G P G+ R +++ Q LEK F K
Sbjct: 107 PSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNK 166
Query: 205 YISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQV 264
Y+ +P R ++AA L L + QV
Sbjct: 167 YLCRPRRVEIAALLDLTER---------------------------------------QV 187
Query: 265 KIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSP 324
K+WFQNRRMK + + G E P L D+ D EE PG P
Sbjct: 188 KVWFQNRRMKHKRQTQHREPPDG---EPACPGALE---DICDPA------EEPAASPGGP 235
Query: 325 S-HRLAYHASSDPQHLRDPRLPGPLPPSP---------AHSSSPG 359
S R A+ A P + +PG L P A +SSPG
Sbjct: 236 SASRAAWEACCHPPEV----VPGALSADPRPLAVRLEGAGASSPG 276
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 55.8 bits (133), Expect = 6e-08
Identities = 74/295 (25%), Positives = 110/295 (37%), Gaps = 73/295 (24%)
Query: 4 PGLLAPPA--GYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTA 61
PG L PPA G SL P PQ L SA + H + D++ P ++P+A
Sbjct: 69 PGGLKPPATGGLSSLGSP------PQQL-SAATPHG---INDILSRPSMPVASGAALPSA 118
Query: 62 SMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPP----------TAFSPASETTFLKFG 111
S S + ++ + + AS + + S P ++ SP L F
Sbjct: 119 SPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFS 178
Query: 112 VNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWP 171
+A + P L +P +T F P + S + + P S
Sbjct: 179 PSAAAVAAVGRYPKP--LAELPGRT-------PIFWPGVMQSPPWRDARLACTPHQGSIL 229
Query: 172 LAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTE 231
L GK + R FS Q ALEK F++ KY++ P+R +LA LG+ +S
Sbjct: 230 LDKDGKRKH---TRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTES-------- 278
Query: 232 PAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSS 286
QVK+WFQNRR KWR E+ ++
Sbjct: 279 -------------------------------QVKVWFQNRRTKWRKKHAAEMATA 302
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 55.8 bits (133), Expect = 6e-08
Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 158 SSSVVPIPGTFSWPLAAR--GKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLA 215
++S +P+P F P A GK R R VFSD Q LEK F+ Q+Y+S P+R +LA
Sbjct: 85 TTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELA 144
Query: 216 AKLGLKDSQDTA---------------RRTEP-APDSTPRPRASP-GAPDLTSASPFFS- 257
L L ++Q + EP APD P SP G+ T+A S
Sbjct: 145 TALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSL 204
Query: 258 PAGTF 262
PAG F
Sbjct: 205 PAGPF 209
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 55.5 bits (132), Expect = 8e-08
Identities = 71/277 (25%), Positives = 98/277 (35%), Gaps = 76/277 (27%)
Query: 85 PGPGSRRGGSPPTAFSPASETTF-LKFGVNAILSSGPRTETSPALLQSVPPKTFAF---P 140
PGP + G P A +P + F + IL GP T L S P +F P
Sbjct: 6 PGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPS-PNSSFTSLVSP 64
Query: 141 YFEGSFQPF----IRSSYFPASSSVVPIPGTFSWPLAA-----------------RGKP- 178
Y ++P S + A+ + PG F PL GKP
Sbjct: 65 YRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPLGKPL 124
Query: 179 ------RRGMLRR----AVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTAR 228
+R + +R FS+ Q LEK F+ QKY+S P+RK+LA L L +
Sbjct: 125 LWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSER----- 179
Query: 229 RTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGG 288
QVK WFQNRR KWR K+ S+
Sbjct: 180 ----------------------------------QVKTWFQNRRAKWRRLKQENPQSNKK 205
Query: 289 CREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPS 325
++L + + DL KG + + P S
Sbjct: 206 EELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPAS 242
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 52.0 bits (123), Expect = 9e-07
Identities = 85/345 (24%), Positives = 119/345 (34%), Gaps = 78/345 (22%)
Query: 18 RPTPTLTLPQSLQSAFSGHSSFLVEDLIR-ISRPPAYLPRSVPTASMSPPRQGAPTA-LT 75
RP +L P S H L E +R +S PP+ P PP Q AP A
Sbjct: 47 RPACSLQSPSSAGGHPKAHE--LSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQP 104
Query: 76 DTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPK 135
A +P P + PP++ SP NA + P LL S
Sbjct: 105 PQPAPQPPAPTPAAP---PPPSSASPPQ---------NASNNPTPANAAKSPLLNSPTVA 152
Query: 136 TFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKA 195
FP+ + S Q + + +SSS G S P A K R ++ Q
Sbjct: 153 KQIFPWMKESRQNTKQKT--SSSSSGESCAGDKSPPGQASSKRAR-----TAYTSAQLVE 205
Query: 196 LEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPF 255
LEK F +Y+ +P R ++A L L +
Sbjct: 206 LEKEFHFNRYLCRPRRVEMANLLNLTER-------------------------------- 233
Query: 256 FSPAGTFQVKIWFQNRRMKWRNSKERE--LLSSGGCREQTLPTKLNPHPDLSDVGQKGPG 313
Q+KIWFQNRRMK++ ++ + L SSGG P PG
Sbjct: 234 -------QIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVP--------------PG 272
Query: 314 NEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSP 358
S + + Y S P + P+ LPP+ +S P
Sbjct: 273 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLP 317
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 52.0 bits (123), Expect = 9e-07
Identities = 85/345 (24%), Positives = 119/345 (34%), Gaps = 78/345 (22%)
Query: 18 RPTPTLTLPQSLQSAFSGHSSFLVEDLIR-ISRPPAYLPRSVPTASMSPPRQGAPTA-LT 75
RP +L P S H L E +R +S PP+ P PP Q AP A
Sbjct: 47 RPACSLQSPSSAGGHPKAHE--LSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQP 104
Query: 76 DTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPK 135
A +P P + PP++ SP NA + P LL S
Sbjct: 105 PQPAPQPPAPTPAAP---PPPSSASPPQ---------NASNNPTPANAAKSPLLNSPTVA 152
Query: 136 TFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKA 195
FP+ + S Q + + +SSS G S P A K R ++ Q
Sbjct: 153 KQIFPWMKESRQNTKQKT--SSSSSGESCAGDKSPPGQASSKRAR-----TAYTSAQLVE 205
Query: 196 LEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPF 255
LEK F +Y+ +P R ++A L L +
Sbjct: 206 LEKEFHFNRYLCRPRRVEMANLLNLTER-------------------------------- 233
Query: 256 FSPAGTFQVKIWFQNRRMKWRNSKERE--LLSSGGCREQTLPTKLNPHPDLSDVGQKGPG 313
Q+KIWFQNRRMK++ ++ + L SSGG P PG
Sbjct: 234 -------QIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVP--------------PG 272
Query: 314 NEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSP 358
S + + Y S P + P+ LPP+ +S P
Sbjct: 273 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLP 317
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 52.0 bits (123), Expect = 9e-07
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 48/139 (34%)
Query: 171 PLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRT 230
P+ A+ KPR+ R FSD Q LE+ F++QKY+S DR LAA L L D+
Sbjct: 226 PVRAK-KPRKA---RTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDT------- 274
Query: 231 EPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKE--RELLSSGG 288
QVK W+QNRR KW+ ELL+ G
Sbjct: 275 --------------------------------QVKTWYQNRRTKWKRQTAVGLELLAEAG 302
Query: 289 ---CREQTLPTKLNPHPDL 304
++ P+ HP L
Sbjct: 303 NYSALQRMFPSPYFYHPSL 321
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 51.6 bits (122), Expect = 1e-06
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 46/152 (30%)
Query: 168 FSW--PLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQD 225
F W P AA G+ RRG R +S Q LEK F Y+++ R +++ LGL + Q
Sbjct: 135 FPWMRPQAAAGR-RRG---RQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ- 189
Query: 226 TARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLS 285
VKIWFQNRRMKW+ ++
Sbjct: 190 --------------------------------------VKIWFQNRRMKWKKENNKDKFP 211
Query: 286 SGGCREQTL-PTKLNPHPDLSDVGQKGPGNEE 316
S C ++ L KL P+ +D G G+++
Sbjct: 212 SSKCEQEELEKQKLERAPEAADEGDAQKGDKK 243
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 50.4 bits (119), Expect = 3e-06
Identities = 68/265 (25%), Positives = 90/265 (33%), Gaps = 60/265 (22%)
Query: 42 EDLIRISRPPAYL-PRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFS 100
+ L+ R P L PRS ++ S P L G+ GPG P +
Sbjct: 26 DPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSA 85
Query: 101 PA-SETTFLKFGVNAIL-------------SSGPRTETSPA-LLQSVPPKTFAFPYFEGS 145
PA S T F + IL SSG P L + + F +
Sbjct: 86 PAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSG 145
Query: 146 FQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKY 205
S Y I + P KPR+ R F+D Q LE+ F++QKY
Sbjct: 146 SNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKA---RTAFTDHQLAQLERSFERQKY 202
Query: 206 ISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVK 265
+S DR +LAA L L D+ QVK
Sbjct: 203 LSVQDRMELAASLNLTDT---------------------------------------QVK 223
Query: 266 IWFQNRRMKWRNSKE--RELLSSGG 288
W+QNRR KW+ ELL+ G
Sbjct: 224 TWYQNRRTKWKRQTAVGLELLAEAG 248
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 50.1 bits (118), Expect = 3e-06
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 39/101 (38%)
Query: 176 GKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD 235
GKP++ R ++S Q AL++ FQK +Y++ P+R +LAA LGL +
Sbjct: 147 GKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQT------------ 194
Query: 236 STPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWR 276
QVKIWFQNRR K++
Sbjct: 195 ---------------------------QVKIWFQNRRSKFK 208
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 50.1 bits (118), Expect = 3e-06
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 39/102 (38%)
Query: 185 RAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDSTPRPRASP 244
R FS Q ALEK F++ KY++ P+R +LA LG+ +S
Sbjct: 152 RPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTES--------------------- 190
Query: 245 GAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSS 286
QVK+WFQNRR KWR E+ S+
Sbjct: 191 ------------------QVKVWFQNRRTKWRKRHAAEMASA 214
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 48.9 bits (115), Expect = 8e-06
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 47/160 (29%)
Query: 177 KPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDS 236
K R+ R +FS Q ALE+ F++Q+Y+S P+R+ LA+ L L +
Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTST------------- 92
Query: 237 TPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPT 296
QVKIWFQNRR K + ++ + L G L
Sbjct: 93 --------------------------QVKIWFQNRRYKCKRQRQDKSLELAG---HPLTP 123
Query: 297 KLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDP 336
+ P L G+ G GPG+P+ Y A+ P
Sbjct: 124 RRVAVPVLVRDGKPCLG-----PGPGAPAFPSPYSAAVSP 158
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 47.8 bits (112), Expect = 2e-05
Identities = 64/249 (25%), Positives = 86/249 (34%), Gaps = 83/249 (33%)
Query: 70 APTALTDTGASDLGSPG-PGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRT------ 122
A T GA G PG PG GG + P + + + VN L+ GP
Sbjct: 64 AATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGS----YNVNMALAGGPGPGGGGGS 119
Query: 123 -----ETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPG-------TFSW 170
S A + VP P P ++ P SV +PG TF W
Sbjct: 120 SGGAGALSAAGVIRVPAHR---PLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPW 176
Query: 171 ---------------PLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLA 215
P R P++ R + F+ +Q LEK F +QKY++ +R LA
Sbjct: 177 MESNRRYTKDRFTGHPYQNRTPPKKKKPRTS-FTRLQICELEKRFHRQKYLASAERAALA 235
Query: 216 AKLGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKW 275
L + D+ QVK WFQNRR KW
Sbjct: 236 KALKMTDA---------------------------------------QVKTWFQNRRTKW 256
Query: 276 R--NSKERE 282
R ++ERE
Sbjct: 257 RRQTAEERE 265
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 39/113 (34%)
Query: 175 RGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAP 234
R KPR R +FS Q LE+ F++Q+Y+S P+R+ LA+ L L +
Sbjct: 142 RPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTST----------- 190
Query: 235 DSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSG 287
QVKIWFQNRR K + ++ + L G
Sbjct: 191 ----------------------------QVKIWFQNRRYKCKRQRQDKSLELG 215
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.0 bits (110), Expect = 3e-05
Identities = 92/394 (23%), Positives = 129/394 (32%), Gaps = 77/394 (19%)
Query: 10 PAGYPSLLRPTPTLTLPQSLQSAFSG--HSSFLVEDLIRISRPPAYLPRSVPTASMSPPR 67
PA P PTP P SL+ + H P P S + P
Sbjct: 1255 PATPPPKGAPTPPAATPPSLKGGLATPPHKG--------APNPAVVTPPSPKGGPATSPP 1306
Query: 68 QGAPTALTDTGASDLGSPG-PGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETS- 125
+GAPT T S GSPG P + +PP P+ + T GP T +S
Sbjct: 1307 KGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSK 1366
Query: 126 ---------------PALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPI-----P 165
PA+ P + A P +G P S +V+P+ P
Sbjct: 1367 EGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGD----------PTSPAVIPLSPKKAP 1416
Query: 166 GTFSWPLAARG--KPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDS 223
T P+ G P +G L + V K K S P K A K
Sbjct: 1417 AT---PVTREGAATPSKGDLTPPAVTPVSLK-------KAPATSAP--KGGPATPSSKGD 1464
Query: 224 QDTARRTEPAPDSTPRPR--ASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKER 281
T P+P P P+ A+ +P A+P A T I + + S R
Sbjct: 1465 PTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRR 1524
Query: 282 E-LLSSGGCREQTLPTKLNPHPDLSDVG------QKGPGNEEEEEGPGSPSHRLA----- 329
+ + + + P L P L +K P +E P +PS + A
Sbjct: 1525 DPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPA 1584
Query: 330 -----YHASSDPQHLRDPRLPGPLPPSPAHSSSP 358
Y + P+ L P P PSP + +P
Sbjct: 1585 VTPSTYKGAPSPKELLIP--PAVTSPSPKEAPTP 1616
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/227 (25%), Positives = 76/227 (33%), Gaps = 31/227 (13%)
Query: 50 PPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPAS------ 103
PPA P S +P +GAPT T S G P S +G P A +P S
Sbjct: 965 PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPA 1024
Query: 104 ETTFLKFGVNAILSSGPRTETSPAL------LQSVPPKTF-------AFPYFEGSFQPFI 150
T F K ++ P + SPA + P T A P +G+ P
Sbjct: 1025 ATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPA 1084
Query: 151 RSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPD 210
+ P P P P AA +G L K + P
Sbjct: 1085 ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPP---------HKGAPTTPAATPPS 1135
Query: 211 RKKLAAKLGLKDSQDTARRTEPAPD---STPRPRASPGAPDLTSASP 254
K A K + T T P+P +TP P+ +P P T SP
Sbjct: 1136 PKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP 1182
Score = 44.3 bits (103), Expect = 2e-04
Identities = 68/263 (25%), Positives = 91/263 (34%), Gaps = 40/263 (15%)
Query: 3 FP-GLLAPPAGYPSLLRPTPTLT-LPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT 60
FP G PPA P + +P T LP+ + P A LP S
Sbjct: 1028 FPKGASTPPAATPPSPKGSPAATPLPKGAPTT-----------------PAATLP-SPKG 1069
Query: 61 ASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGP 120
+P +GAPT T S G P S +G P A +P S K G+ G
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP----KGGLATPPHKG- 1124
Query: 121 RTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIP-GTFSWPLAARGKPR 179
T+PA P A P +G+ + P P P G + P A P+
Sbjct: 1125 -APTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPK 1183
Query: 180 RGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD---S 236
G+ + K + P K A K + T T P+P +
Sbjct: 1184 GGLATPS----------PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1233
Query: 237 TPRPRASPGAPDLTSASPFFSPA 259
TP P+ +P P T SP PA
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGPA 1256
Score = 43.1 bits (100), Expect = 4e-04
Identities = 74/312 (23%), Positives = 100/312 (32%), Gaps = 66/312 (21%)
Query: 51 PAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKF 110
PA P S +PP +GAPT T S G S +G A +P S K
Sbjct: 1152 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP----KG 1207
Query: 111 GVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSW 170
G+ G T+PA P A P +G+ + P P P
Sbjct: 1208 GLATPSPKG--APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPT 1265
Query: 171 PLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRT 230
P AA +G L A+ ++ P K A K + T
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAV---------VTPPSPKGGPATSPPKGAPTPPAAT 1316
Query: 231 EPAP---DSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSG 287
P+P TP P+ +P P +T SP +P
Sbjct: 1317 PPSPKGSPGTPPPKGAPTPPAVTPPSPKGTP----------------------------- 1347
Query: 288 GCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGP----GSPSHRLAYHASSDPQHLRDPR 343
TLP + + GP +EGP +PSH+ A + P R P
Sbjct: 1348 -----TLPA-------TTPSSKGGPTTPSSKEGPTPPAATPSHK-GGPAMTPPSPKRGPA 1394
Query: 344 LPGPL--PPSPA 353
+P P P SPA
Sbjct: 1395 IPSPKGDPTSPA 1406
Score = 39.3 bits (90), Expect = 0.006
Identities = 51/208 (24%), Positives = 70/208 (33%), Gaps = 39/208 (18%)
Query: 50 PPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLK 109
PPA P S +P + APT T S G P S +G P A +P S
Sbjct: 942 PPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSP----- 996
Query: 110 FGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFS 169
GP T SP + P T P + PF + + P +++
Sbjct: 997 -------KGGPAT-PSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT--------- 1039
Query: 170 WPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARR 229
P + +G P L K + P K A LK +
Sbjct: 1040 -PPSPKGSP-------------AATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAA 1085
Query: 230 TEPAP---DSTPRPRASPGAPDLTSASP 254
T P+P +TP P+ +P P T SP
Sbjct: 1086 TPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Score = 38.1 bits (87), Expect = 0.013
Identities = 49/201 (24%), Positives = 70/201 (34%), Gaps = 26/201 (12%)
Query: 64 SPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTE 123
SP +PT + GA + P S +G + P +P L F + P+
Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQA 908
Query: 124 TSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGML 183
+ ++ S P K A P +G PAS S P P A P+ G
Sbjct: 909 PALSMTSSSPKKARATPAPKG----------IPASPSPKGAPTP---PAATPPSPKGGPA 955
Query: 184 RRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD---STPRP 240
+ K + P K A K + T P+P +TP P
Sbjct: 956 TPS----------PKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSP 1005
Query: 241 RASPGAPDLTSASPFFSPAGT 261
+ +P P +T SP SPA T
Sbjct: 1006 KGAPTPPAVTPPSPKGSPAAT 1026
Score = 34.7 bits (78), Expect = 0.15
Identities = 76/312 (24%), Positives = 106/312 (33%), Gaps = 100/312 (32%)
Query: 54 LPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVN 113
+P+SVP+ S+ PP P G S + P + PT S AS T K G
Sbjct: 730 IPKSVPSPSL-PPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSK-GTL 787
Query: 114 AILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLA 173
L+ P SP L SV P+T P +GS P + SS V P+ +F
Sbjct: 788 TYLADSP----SP-LGVSVSPQTKRPPTKKGSAGP--DTPIGNLSSPVSPVEASFL---- 836
Query: 174 ARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPA 233
P + FQ G KDS PA
Sbjct: 837 ----PENSL----------------SFQ-----------------GSKDS--------PA 851
Query: 234 PDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGGCREQT 293
+P P + GAP ++ +P SP G T
Sbjct: 852 TTHSPTPPSPKGAPTPSAVTPL-SPKGV-------------------------------T 879
Query: 294 LPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLA---YHASSDPQHLRDPRLPGPLPP 350
LP K P P + ++ +EGP +P+ + A SS P+ R P +P
Sbjct: 880 LPPKETPTPSVVNL-------PFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPA 932
Query: 351 SPAHSSSPGKPS 362
SP+ +P P+
Sbjct: 933 SPSPKGAPTPPA 944
Score = 31.2 bits (69), Expect = 1.6
Identities = 66/273 (24%), Positives = 103/273 (37%), Gaps = 51/273 (18%)
Query: 8 APPAGYPSLLRPTPT---LTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMS 64
+PPA PS + P+ L +P ++ S + PPA P S +
Sbjct: 1581 SPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAP----------TPPAVTPPSPEKGPAT 1630
Query: 65 PPRQGAPTALTDTGASDLGSP-GPGS---RRGGSPPTA-----------------FSPAS 103
P +G PT+ T +S SP P S + G + P A +PA
Sbjct: 1631 PAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAPAP 1690
Query: 104 ETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVP 163
E+T + + A GP+T+ S A + P A GS P S+ PA ++P
Sbjct: 1691 ESTPI---ITAPTRKGPQTKKSSATSPPICPDPSA---KNGSKGPL--STVAPA--PLLP 1740
Query: 164 IPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQK--QKYISKPDRKKLAAKLGLK 221
+ S A+GK + + + KA + +K + KP+ ++A
Sbjct: 1741 VQKDSS--KTAKGKD-ASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPP 1797
Query: 222 DSQDTARRTEPAPDSTPRPRASPGAPDLTSASP 254
S A P P P+ + P +P L SP
Sbjct: 1798 VSLPLA--PSPVPTLPPKQQFLPSSPGLVLESP 1828
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 46.2 bits (108), Expect = 5e-05
Identities = 53/194 (27%), Positives = 72/194 (37%), Gaps = 59/194 (30%)
Query: 173 AARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEP 232
AA PRR RR +FS Q LE+ F++QKY+S P+R+ LA+ + L
Sbjct: 183 AAAAAPRRK--RRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL------------ 228
Query: 233 APDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKW-RNSKER---ELLSSGG 288
TP QVKIWFQN R K R +K++ +L GG
Sbjct: 229 ----TPT-----------------------QVKIWFQNHRYKMKRQAKDKAAQQLQQEGG 261
Query: 289 CREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPL 348
P P P V + + G +P+ A P+ P P
Sbjct: 262 LGPPPPPP---PSPRRVAVPVLVKDGKPCQNGASTPTPGQA-----------GPQPPAPT 307
Query: 349 PPSPAHSSSPGKPS 362
P SP P+
Sbjct: 308 PAPELEELSPSPPA 321
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 45.8 bits (107), Expect = 6e-05
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 44/113 (38%)
Query: 176 GKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPD 235
GK ++ R ++S +Q +AL + FQ+ +Y++ P+R +LAA LGL +
Sbjct: 123 GKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQT------------ 170
Query: 236 STPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGG 288
QVKIWFQN+R SK ++L+ GG
Sbjct: 171 ---------------------------QVKIWFQNKR-----SKFKKLMKQGG 191
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 45.8 bits (107), Expect = 6e-05
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 39/116 (33%)
Query: 173 AARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEP 232
A R + RR R +FS Q LE+ F++Q+Y+S P+R +LA+ L L +
Sbjct: 130 AERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST--------- 180
Query: 233 APDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELLSSGG 288
QVKIWFQNRR K + ++ + L G
Sbjct: 181 ------------------------------QVKIWFQNRRYKCKRQRQDQTLELVG 206
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 45.1 bits (105), Expect = 1e-04
Identities = 57/220 (25%), Positives = 84/220 (38%), Gaps = 75/220 (34%)
Query: 158 SSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAK 217
S ++ P+P PRR RR +FS Q LE+ F++QKY+S P+R+ LA+
Sbjct: 180 SKNMAPLPSA----------PRRK--RRVLFSQAQVYELERRFKQQKYLSAPEREHLASM 227
Query: 218 LGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKW-R 276
+ L TP QVKIWFQN R K R
Sbjct: 228 IHL----------------TPT-----------------------QVKIWFQNHRYKMKR 248
Query: 277 NSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDP 336
+K++ +Q L D G G G G G P + A S P
Sbjct: 249 QAKDK-------AAQQQLQ---------QDSGGGGGGG-----GTGCPQQQQAQQQS--P 285
Query: 337 QHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQ 376
+ + P L P A + +PG S ++++ + + Q
Sbjct: 286 RRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 325
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 45.1 bits (105), Expect = 1e-04
Identities = 57/220 (25%), Positives = 84/220 (38%), Gaps = 75/220 (34%)
Query: 158 SSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAK 217
S ++ P+P PRR RR +FS Q LE+ F++QKY+S P+R+ LA+
Sbjct: 150 SKNMAPLPSA----------PRRK--RRVLFSQAQVYELERRFKQQKYLSAPEREHLASM 197
Query: 218 LGLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKW-R 276
+ L TP QVKIWFQN R K R
Sbjct: 198 IHL----------------TPT-----------------------QVKIWFQNHRYKMKR 218
Query: 277 NSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDP 336
+K++ +Q L D G G G G G P + A S P
Sbjct: 219 QAKDK-------AAQQQLQ---------QDSGGGGGGG-----GTGCPQQQQAQQQS--P 255
Query: 337 QHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQ 376
+ + P L P A + +PG S ++++ + + Q
Sbjct: 256 RRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 295
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 44.7 bits (104), Expect = 1e-04
Identities = 64/244 (26%), Positives = 82/244 (33%), Gaps = 77/244 (31%)
Query: 50 PPAYLPRS----VPTASMSPPRQGAP-TALTDTGASDLGSPGPGSRRGG------SPPTA 98
PP Y S V A P GAP A D A+ G PGP + PP
Sbjct: 39 PPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYG-PGPAAPAASPASLAFGPPPD 97
Query: 99 FSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPAS 158
FSP G+ A GP T +SP + P + ++R S
Sbjct: 98 FSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYE-------------WMRRSVAAGG 144
Query: 159 SSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKL 218
GK R R V++D QR LEK F +YI+ + +LAA L
Sbjct: 145 GG-------------GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANL 191
Query: 219 GLKDSQDTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNS 278
GL + QVKIWFQNRR K R
Sbjct: 192 GLTER---------------------------------------QVKIWFQNRRAKERKV 212
Query: 279 KERE 282
+++
Sbjct: 213 NKKK 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,746,855
Number of Sequences: 37866
Number of extensions: 1342688
Number of successful extensions: 12284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 487
Number of HSP's that attempted gapping in prelim test: 9816
Number of HSP's gapped (non-prelim): 2763
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.