Guide to the Human Genome
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Name: LOC645101 Sequence: fasta or formatted (91aa) NCBI GI: 169165476
Description:

PREDICTED: similar to high-mobility group box 2

Not currently referenced in the text

Other entries for this name:
alt prot {91aa} PREDICTED: similar to high-mobility group box 2
alt mRNA {91aa} PREDICTED: similar to high-mobility group box 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          5           1
 C cysteine            2.2          2           1
 D aspartate           6.6          6           1
 E glutamate           5.5          5           2
 F phenylalanine       5.5          5           2
 G glycine             6.6          6           1
 H histidine           2.2          2           1
 I isoleucine          3.3          3           1
 K lysine             20.9         19           4
 L leucine             5.5          5           1
 M methionine          3.3          3           1
 N asparagine          3.3          3           1
 P proline             4.4          4           1
 Q glutamine           2.2          2           1
 R arginine            7.7          7           1
 S serine              4.4          4           1
 T threonine           1.1          1           1
 V valine              5.5          5           1
 W tryptophan          2.2          2           1
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to high-mobility group box 2 [Ho... 
LOC645101             1.000   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.988   PREDICTED: similar to high-mobility group box 2 [Ho...
HMGB3                 0.339   high-mobility group box 3 
LOC441795             0.298   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.298   PREDICTED: high mobility group protein B3-like prot...
LOC203510             0.280   PREDICTED: similar to hCG1644442 
LOC203510             0.280   PREDICTED: similar to hCG1644442 
LOC203510             0.280   PREDICTED: hypothetical protein LOC203510 
LOC646993             0.256   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.256   PREDICTED: similar to high mobility group box 3 [Ho...
HMGB2                 0.256   high-mobility group box 2 
HMGB2                 0.256   high-mobility group box 2 
HMGB2                 0.256   high-mobility group box 2 
HMGB1                 0.244   high-mobility group box 1 
LOC646993             0.232   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.232   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.232   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.232   PREDICTED: similar to high mobility group box 3 iso...
HMGB1L1               0.214   high-mobility group box 1-like 1 
SP100                 0.071   nuclear antigen Sp100 isoform 2 
LOC100293660          0.012   PREDICTED: similar to hCG1990723 
LOC100291414          0.012   PREDICTED: hypothetical protein XP_002347250 
LOC100288976          0.012   PREDICTED: hypothetical protein XP_002343115 
SPTA1                 0.006   spectrin, alpha, erythrocytic 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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