BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|71143121 nanos homolog 2 [Homo sapiens] (138 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|71143121 nanos homolog 2 [Homo sapiens] 298 1e-81 gi|148886760 nanos homolog 3 [Homo sapiens] 119 6e-28 gi|40804761 nanos homolog 1 [Homo sapiens] 86 1e-17 gi|156416026 zinc finger protein 219 [Homo sapiens] 33 0.075 gi|156415998 zinc finger protein 219 [Homo sapiens] 33 0.075 gi|156415996 zinc finger protein 219 [Homo sapiens] 33 0.075 gi|4503433 E2F transcription factor 3 [Homo sapiens] 31 0.28 gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo ... 31 0.28 gi|40807477 retinoic acid induced 1 [Homo sapiens] 30 0.49 gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens] 30 0.83 gi|24308069 zinc finger protein 521 [Homo sapiens] 30 0.83 gi|169211979 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1 gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 28 1.8 gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 28 2.4 gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 28 2.4 gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 28 2.4 gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 28 2.4 gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Hom... 28 2.4 gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 28 2.4 gi|56549696 E1A binding protein p400 [Homo sapiens] 28 2.4 gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 28 2.4 gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 28 2.4 gi|209977097 tripartite motif-containing 66 [Homo sapiens] 28 3.1 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 28 3.1 gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 28 3.1 gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 28 3.1 gi|7662092 zinc finger protein 536 [Homo sapiens] 28 3.1 gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo sapi... 28 3.1 gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo sapi... 28 3.1 gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens] 27 4.1 >gi|71143121 nanos homolog 2 [Homo sapiens] Length = 138 Score = 298 bits (763), Expect = 1e-81 Identities = 138/138 (100%), Positives = 138/138 (100%) Query: 1 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 60 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG Sbjct: 1 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 60 Query: 61 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 120 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ Sbjct: 61 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 120 Query: 121 QSLYRRSGRNSAGRRVKR 138 QSLYRRSGRNSAGRRVKR Sbjct: 121 QSLYRRSGRNSAGRRVKR 138 >gi|148886760 nanos homolog 3 [Homo sapiens] Length = 192 Score = 119 bits (299), Expect = 6e-28 Identities = 65/152 (42%), Positives = 87/152 (57%), Gaps = 21/152 (13%) Query: 6 FDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGP---------PLGQDQGLGAPG-- 54 FD+W DY L+ +V AL G ET+ +P P P P+ + + PG Sbjct: 4 FDLWTDYLGLAHLVRALSGKEGP--ETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGPK 61 Query: 55 -------ANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQ 107 ++ LC+FCKHNGESR +Y SH LK G V+CPILR YVCP CGAT ++ Sbjct: 62 DQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRER 121 Query: 108 AHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR 138 AHT ++CPL G G S+Y + RNSAG+++ R Sbjct: 122 AHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVR 153 >gi|40804761 nanos homolog 1 [Homo sapiens] Length = 292 Score = 85.9 bits (211), Expect = 1e-17 Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 62 LCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLN 117 +C FC++N E+ +Y++H LK PDG V+CP+LR Y CP+CGA+GD AHT+KYCPL+ Sbjct: 213 VCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 268 >gi|156416026 zinc finger protein 219 [Homo sapiens] Length = 722 Score = 33.1 bits (74), Expect = 0.075 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 49 GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108 G G G G C FC + S H H L+ G R Y CP C G Q+ Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538 Query: 109 HTLKY 113 +LKY Sbjct: 539 GSLKY 543 >gi|156415998 zinc finger protein 219 [Homo sapiens] Length = 722 Score = 33.1 bits (74), Expect = 0.075 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 49 GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108 G G G G C FC + S H H L+ G R Y CP C G Q+ Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538 Query: 109 HTLKY 113 +LKY Sbjct: 539 GSLKY 543 >gi|156415996 zinc finger protein 219 [Homo sapiens] Length = 722 Score = 33.1 bits (74), Expect = 0.075 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 49 GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108 G G G G C FC + S H H L+ G R Y CP C G Q+ Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538 Query: 109 HTLKY 113 +LKY Sbjct: 539 GSLKY 543 >gi|4503433 E2F transcription factor 3 [Homo sapiens] Length = 465 Score = 31.2 bits (69), Expect = 0.28 Identities = 19/43 (44%), Positives = 20/43 (46%) Query: 44 LGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDG 86 L Q LG G+ GG G GES H Y S LKTP G Sbjct: 113 LQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKG 155 >gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo sapiens] Length = 205 Score = 31.2 bits (69), Expect = 0.28 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 10 KDYFNLSQVVWALIASRGQRLETQEIEEPS--PGPPLGQDQGLGAPGANGGLGTLCNFCK 67 ++Y QV + + S +RL E + P GQ GL A GA+ G+G CK Sbjct: 47 QNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVG---GSCK 103 Query: 68 HNGESR 73 H GE++ Sbjct: 104 HFGETK 109 >gi|40807477 retinoic acid induced 1 [Homo sapiens] Length = 1906 Score = 30.4 bits (67), Expect = 0.49 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Query: 35 IEEPSPGPPLGQDQGLGAP--GANGGLGTLC 63 + E GPP GQ +G GAP GA+ GL +C Sbjct: 1026 LPESCTGPPQGQMEGAGAPGRGASEGLPRMC 1056 >gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens] Length = 1294 Score = 29.6 bits (65), Expect = 0.83 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 33/107 (30%) Query: 25 SRGQRLETQEIEEPSPGPPL---------GQDQGLGAPGANGGLGTL--CNFCKHNGESR 73 SRG + ++ + S G + + + + GA + T C FC Sbjct: 489 SRGSVINQNDLAKSSEGETMTKTDKSSSGAKKKDFSSKGAEDNMVTSYNCQFCDFRYSKS 548 Query: 74 HVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAH-----TLKYCP 115 H PD +VV P+LRHY Q H T+K+CP Sbjct: 549 H--------GPDVIVVGPLLRHY---------QQLHNIHKCTIKHCP 578 >gi|24308069 zinc finger protein 521 [Homo sapiens] Length = 1311 Score = 29.6 bits (65), Expect = 0.83 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 42 PPLGQDQGLGA---PGANGGLGTLCNFCKHNGES-----RHVYSSHQLKTPD 85 P LGQ++ L A G GGL T C+ C ES H+ + H+ PD Sbjct: 1116 PGLGQNENLSAIEGKGKVGGLKTRCSSCNVKFESESELQNHIQTIHRELVPD 1167 Score = 28.5 bits (62), Expect = 1.8 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%) Query: 63 CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102 CN C SR +S + L+ + P+ +HY+CP+CG Sbjct: 932 CNVC-----SRTFFSENGLREHMQTHLGPV-KHYMCPICG 965 >gi|169211979 PREDICTED: hypothetical protein [Homo sapiens] Length = 168 Score = 29.3 bits (64), Expect = 1.1 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 62 LCNFCKH--NGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGD 106 +CN CK G S +Y +TP ++ YVCP C +T D Sbjct: 60 ICNDCKQAQEGSSEELYCI--CRTPAVTSEAELIDEYVCPQCQSTED 104 >gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] Length = 581 Score = 28.5 bits (62), Expect = 1.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 2 QLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANG 57 +LPP F L +V SRG++ + Q+ + P P PP G + L P G Sbjct: 158 ELPPVP-----FPLQDLVPLGRLSRGEQQQQQQQQPPPPPPPPGPLRPLAGPSRKG 208 >gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo sapiens] Length = 600 Score = 28.1 bits (61), Expect = 2.4 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 38 PSPGPPLGQDQGLGAPGA-NGGLGTL 62 P P PP G D+G G PG GG G L Sbjct: 497 PPPFPPPGGDRGRGGPGGMRGGRGGL 522 >gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo sapiens] Length = 655 Score = 28.1 bits (61), Expect = 2.4 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 38 PSPGPPLGQDQGLGAPGA-NGGLGTL 62 P P PP G D+G G PG GG G L Sbjct: 552 PPPFPPPGGDRGRGGPGGMRGGRGGL 577 >gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo sapiens] Length = 661 Score = 28.1 bits (61), Expect = 2.4 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 38 PSPGPPLGQDQGLGAPGA-NGGLGTL 62 P P PP G D+G G PG GG G L Sbjct: 558 PPPFPPPGGDRGRGGPGGMRGGRGGL 583 >gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sapiens] Length = 656 Score = 28.1 bits (61), Expect = 2.4 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 38 PSPGPPLGQDQGLGAPGA-NGGLGTL 62 P P PP G D+G G PG GG G L Sbjct: 553 PPPFPPPGGDRGRGGPGGMRGGRGGL 578 >gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Homo sapiens] Length = 252 Score = 28.1 bits (61), Expect = 2.4 Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 12 YFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCK 67 +F S + A+ +RG R + PGPPLG+ G P G L C+ Sbjct: 13 HFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCR 68 >gi|154355000 KH-type splicing regulatory protein [Homo sapiens] Length = 711 Score = 28.1 bits (61), Expect = 2.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 38 PSPGPPLGQDQGLGAPGANG 57 P PGPP D+G G PG G Sbjct: 30 PPPGPPGAGDRGGGGPGGGG 49 Score = 26.2 bits (56), Expect = 9.2 Identities = 12/21 (57%), Positives = 12/21 (57%) Query: 38 PSPGPPLGQDQGLGAPGANGG 58 P PGPP G GA GA GG Sbjct: 9 PPPGPPPPAGGGGGAGGAGGG 29 >gi|56549696 E1A binding protein p400 [Homo sapiens] Length = 3122 Score = 28.1 bits (61), Expect = 2.4 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 28 QRLETQEIEEPSPGPPLG-QDQGLGAPGANGGL 59 Q+++TQ +PSPGP Q+ GAPG GL Sbjct: 129 QQVQTQSPTQPSPGPGQALQNVRAGAPGPGLGL 161 >gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42 precursor [Homo sapiens] Length = 2012 Score = 28.1 bits (61), Expect = 2.4 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 80 QLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYRRSGRNS 131 ++ T G V P ++ V P C A GD + +K+ + G SL GR S Sbjct: 1287 RILTFSGTVTTPWMKDIVLP-CKAVGDPSPAVKWMKDSNGTPSLVTIDGRRS 1337 >gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [Homo sapiens] Length = 731 Score = 28.1 bits (61), Expect = 2.4 Identities = 14/39 (35%), Positives = 17/39 (43%) Query: 28 QRLETQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFC 66 +R +E P P PL + G GA G LG N C Sbjct: 160 RRRRGREAGPPQPMVPLAVENQAGGEGAGGELGISLNMC 198 >gi|209977097 tripartite motif-containing 66 [Homo sapiens] Length = 1216 Score = 27.7 bits (60), Expect = 3.1 Identities = 12/29 (41%), Positives = 14/29 (48%) Query: 38 PSPGPPLGQDQGLGAPGANGGLGTLCNFC 66 P PG P G+PG NGG G +C Sbjct: 37 PVPGGPFFPRAQKGSPGVNGGPGDFTLYC 65 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 27.7 bits (60), Expect = 3.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 25 SRGQRLETQEIEEPSPGPPLGQDQGLGAPGANG 57 SRG+R + +P P +GQD G PG G Sbjct: 837 SRGERGQPGATGQPGPKGDVGQDGAPGIPGEKG 869 >gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo sapiens] Length = 1687 Score = 27.7 bits (60), Expect = 3.1 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%) Query: 6 FDMWKDYFNLSQVVWALIASR----------GQRLETQEIEEPSPGPPL 44 F+ WK + L W + +R +RL ++ EP P PP+ Sbjct: 1332 FEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380 >gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo sapiens] Length = 1659 Score = 27.7 bits (60), Expect = 3.1 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%) Query: 6 FDMWKDYFNLSQVVWALIASR----------GQRLETQEIEEPSPGPPL 44 F+ WK + L W + +R +RL ++ EP P PP+ Sbjct: 1332 FEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380 >gi|7662092 zinc finger protein 536 [Homo sapiens] Length = 1300 Score = 27.7 bits (60), Expect = 3.1 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 20/108 (18%) Query: 36 EEPSPGPPLGQDQGLGAPGANG----------GLGTLCNFCKHNGESRHVYSSHQLKTPD 85 + P P P D G A + G LG+ C + G++ +SH LK Sbjct: 713 DSPHPSSPSSSDIGEEAGRSAGVQQPALLRDRSLGSAMKDCPYCGKTFR--TSHHLKVHL 770 Query: 86 GVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYRRSGRNSAG 133 + + Y CP C G Q+ +LKY + R +N AG Sbjct: 771 RIHTGE--KPYKCPHCDYAGTQSASLKY------HLERHHRERQNGAG 810 >gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo sapiens] Length = 262 Score = 27.7 bits (60), Expect = 3.1 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 18/78 (23%) Query: 43 PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102 P G D L P TLC FC H Y H+ CPI C Sbjct: 61 PTGMDCKLVGPE------TLC-FCTHR------YKQHKTDLEAIPQQCPIDLP-----CQ 102 Query: 103 ATGDQAHTLKYCPLNGGQ 120 TG Q Y PLNG Q Sbjct: 103 VTGCQCRAYLYVPLNGSQ 120 >gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo sapiens] Length = 298 Score = 27.7 bits (60), Expect = 3.1 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 18/78 (23%) Query: 43 PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102 P G D L P TLC FC H Y H+ CPI C Sbjct: 61 PTGMDCKLVGPE------TLC-FCTHR------YKQHKTDLEAIPQQCPIDLP-----CQ 102 Query: 103 ATGDQAHTLKYCPLNGGQ 120 TG Q Y PLNG Q Sbjct: 103 VTGCQCRAYLYVPLNGSQ 120 >gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens] Length = 133 Score = 27.3 bits (59), Expect = 4.1 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 8/67 (11%) Query: 37 EPSPGP---PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPIL 93 E SPG P GQ GL A A L + + + +SH T G V CP Sbjct: 70 ELSPGLSHLPAGQGSGLAACHAQASL----RWAPCEARASRMGASH-CSTAPGPVHCPRA 124 Query: 94 RHYVCPV 100 Y CPV Sbjct: 125 EEYRCPV 131 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.138 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,094,304 Number of Sequences: 37866 Number of extensions: 367304 Number of successful extensions: 1890 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 31 Number of HSP's that attempted gapping in prelim test: 1810 Number of HSP's gapped (non-prelim): 102 length of query: 138 length of database: 18,247,518 effective HSP length: 91 effective length of query: 47 effective length of database: 14,801,712 effective search space: 695680464 effective search space used: 695680464 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.