Guide to the Human Genome
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Search of human proteins with 71143121

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71143121 nanos homolog 2 [Homo sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71143121 nanos homolog 2 [Homo sapiens]                            298   1e-81
gi|148886760 nanos homolog 3 [Homo sapiens]                           119   6e-28
gi|40804761 nanos homolog 1 [Homo sapiens]                             86   1e-17
gi|156416026 zinc finger protein 219 [Homo sapiens]                    33   0.075
gi|156415998 zinc finger protein 219 [Homo sapiens]                    33   0.075
gi|156415996 zinc finger protein 219 [Homo sapiens]                    33   0.075
gi|4503433 E2F transcription factor 3 [Homo sapiens]                   31   0.28 
gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo ...    31   0.28 
gi|40807477 retinoic acid induced 1 [Homo sapiens]                     30   0.49 
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]      30   0.83 
gi|24308069 zinc finger protein 521 [Homo sapiens]                     30   0.83 
gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]          28   1.8  
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    28   2.4  
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    28   2.4  
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    28   2.4  
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    28   2.4  
gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Hom...    28   2.4  
gi|154355000 KH-type splicing regulatory protein [Homo sapiens]        28   2.4  
gi|56549696 E1A binding protein p400 [Homo sapiens]                    28   2.4  
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42...    28   2.4  
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [...    28   2.4  
gi|209977097 tripartite motif-containing 66 [Homo sapiens]             28   3.1  
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    28   3.1  
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho...    28   3.1  
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom...    28   3.1  
gi|7662092 zinc finger protein 536 [Homo sapiens]                      28   3.1  
gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo sapi...    28   3.1  
gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo sapi...    28   3.1  
gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]           27   4.1  

>gi|71143121 nanos homolog 2 [Homo sapiens]
          Length = 138

 Score =  298 bits (763), Expect = 1e-81
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 60
           MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG
Sbjct: 1   MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 60

Query: 61  TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 120
           TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ
Sbjct: 61  TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 120

Query: 121 QSLYRRSGRNSAGRRVKR 138
           QSLYRRSGRNSAGRRVKR
Sbjct: 121 QSLYRRSGRNSAGRRVKR 138


>gi|148886760 nanos homolog 3 [Homo sapiens]
          Length = 192

 Score =  119 bits (299), Expect = 6e-28
 Identities = 65/152 (42%), Positives = 87/152 (57%), Gaps = 21/152 (13%)

Query: 6   FDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGP---------PLGQDQGLGAPG-- 54
           FD+W DY  L+ +V AL    G   ET+   +P P P         P+   + +  PG  
Sbjct: 4   FDLWTDYLGLAHLVRALSGKEGP--ETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGPK 61

Query: 55  -------ANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQ 107
                  ++     LC+FCKHNGESR +Y SH LK   G V+CPILR YVCP CGAT ++
Sbjct: 62  DQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRER 121

Query: 108 AHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR 138
           AHT ++CPL G G  S+Y  + RNSAG+++ R
Sbjct: 122 AHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVR 153


>gi|40804761 nanos homolog 1 [Homo sapiens]
          Length = 292

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 62  LCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLN 117
           +C FC++N E+  +Y++H LK PDG V+CP+LR Y CP+CGA+GD AHT+KYCPL+
Sbjct: 213 VCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 268


>gi|156416026 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 49  GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108
           G    G  G  G  C FC  +  S H    H L+   G       R Y CP C   G Q+
Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538

Query: 109 HTLKY 113
            +LKY
Sbjct: 539 GSLKY 543


>gi|156415998 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 49  GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108
           G    G  G  G  C FC  +  S H    H L+   G       R Y CP C   G Q+
Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538

Query: 109 HTLKY 113
            +LKY
Sbjct: 539 GSLKY 543


>gi|156415996 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 49  GLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQA 108
           G    G  G  G  C FC  +  S H    H L+   G       R Y CP C   G Q+
Sbjct: 486 GTRPEGGRGATGKDCPFCGKSFRSAHHLKVH-LRVHTGE------RPYKCPHCDYAGTQS 538

Query: 109 HTLKY 113
            +LKY
Sbjct: 539 GSLKY 543


>gi|4503433 E2F transcription factor 3 [Homo sapiens]
          Length = 465

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 19/43 (44%), Positives = 20/43 (46%)

Query: 44  LGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDG 86
           L Q   LG  G+ GG G         GES H Y S  LKTP G
Sbjct: 113 LQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKG 155


>gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo
           sapiens]
          Length = 205

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 10  KDYFNLSQVVWALIASRGQRLETQEIEEPS--PGPPLGQDQGLGAPGANGGLGTLCNFCK 67
           ++Y    QV  + + S  +RL     E  +     P GQ  GL A GA+ G+G     CK
Sbjct: 47  QNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVG---GSCK 103

Query: 68  HNGESR 73
           H GE++
Sbjct: 104 HFGETK 109


>gi|40807477 retinoic acid induced 1 [Homo sapiens]
          Length = 1906

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 35   IEEPSPGPPLGQDQGLGAP--GANGGLGTLC 63
            + E   GPP GQ +G GAP  GA+ GL  +C
Sbjct: 1026 LPESCTGPPQGQMEGAGAPGRGASEGLPRMC 1056


>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
          Length = 1294

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 33/107 (30%)

Query: 25  SRGQRLETQEIEEPSPGPPL---------GQDQGLGAPGANGGLGTL--CNFCKHNGESR 73
           SRG  +   ++ + S G  +          + +   + GA   + T   C FC       
Sbjct: 489 SRGSVINQNDLAKSSEGETMTKTDKSSSGAKKKDFSSKGAEDNMVTSYNCQFCDFRYSKS 548

Query: 74  HVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAH-----TLKYCP 115
           H         PD +VV P+LRHY          Q H     T+K+CP
Sbjct: 549 H--------GPDVIVVGPLLRHY---------QQLHNIHKCTIKHCP 578


>gi|24308069 zinc finger protein 521 [Homo sapiens]
          Length = 1311

 Score = 29.6 bits (65), Expect = 0.83
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 42   PPLGQDQGLGA---PGANGGLGTLCNFCKHNGES-----RHVYSSHQLKTPD 85
            P LGQ++ L A    G  GGL T C+ C    ES      H+ + H+   PD
Sbjct: 1116 PGLGQNENLSAIEGKGKVGGLKTRCSSCNVKFESESELQNHIQTIHRELVPD 1167



 Score = 28.5 bits (62), Expect = 1.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 63  CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102
           CN C     SR  +S + L+      + P+ +HY+CP+CG
Sbjct: 932 CNVC-----SRTFFSENGLREHMQTHLGPV-KHYMCPICG 965


>gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 168

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 62  LCNFCKH--NGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGD 106
           +CN CK    G S  +Y     +TP       ++  YVCP C +T D
Sbjct: 60  ICNDCKQAQEGSSEELYCI--CRTPAVTSEAELIDEYVCPQCQSTED 104


>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
          Length = 581

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 2   QLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANG 57
           +LPP       F L  +V     SRG++ + Q+ + P P PP G  + L  P   G
Sbjct: 158 ELPPVP-----FPLQDLVPLGRLSRGEQQQQQQQQPPPPPPPPGPLRPLAGPSRKG 208


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 38  PSPGPPLGQDQGLGAPGA-NGGLGTL 62
           P P PP G D+G G PG   GG G L
Sbjct: 497 PPPFPPPGGDRGRGGPGGMRGGRGGL 522


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 38  PSPGPPLGQDQGLGAPGA-NGGLGTL 62
           P P PP G D+G G PG   GG G L
Sbjct: 552 PPPFPPPGGDRGRGGPGGMRGGRGGL 577


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 38  PSPGPPLGQDQGLGAPGA-NGGLGTL 62
           P P PP G D+G G PG   GG G L
Sbjct: 558 PPPFPPPGGDRGRGGPGGMRGGRGGL 583


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 38  PSPGPPLGQDQGLGAPGA-NGGLGTL 62
           P P PP G D+G G PG   GG G L
Sbjct: 553 PPPFPPPGGDRGRGGPGGMRGGRGGL 578


>gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Homo
          sapiens]
          Length = 252

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 12 YFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCK 67
          +F  S +  A+  +RG R   +      PGPPLG+    G P      G L   C+
Sbjct: 13 HFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCR 68


>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
          Length = 711

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 38 PSPGPPLGQDQGLGAPGANG 57
          P PGPP   D+G G PG  G
Sbjct: 30 PPPGPPGAGDRGGGGPGGGG 49



 Score = 26.2 bits (56), Expect = 9.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 38 PSPGPPLGQDQGLGAPGANGG 58
          P PGPP     G GA GA GG
Sbjct: 9  PPPGPPPPAGGGGGAGGAGGG 29


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 28  QRLETQEIEEPSPGPPLG-QDQGLGAPGANGGL 59
           Q+++TQ   +PSPGP    Q+   GAPG   GL
Sbjct: 129 QQVQTQSPTQPSPGPGQALQNVRAGAPGPGLGL 161


>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
            precursor [Homo sapiens]
          Length = 2012

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 80   QLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYRRSGRNS 131
            ++ T  G V  P ++  V P C A GD +  +K+   + G  SL    GR S
Sbjct: 1287 RILTFSGTVTTPWMKDIVLP-CKAVGDPSPAVKWMKDSNGTPSLVTIDGRRS 1337


>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
           [Homo sapiens]
          Length = 731

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 28  QRLETQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFC 66
           +R   +E   P P  PL  +   G  GA G LG   N C
Sbjct: 160 RRRRGREAGPPQPMVPLAVENQAGGEGAGGELGISLNMC 198


>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
          Length = 1216

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 38 PSPGPPLGQDQGLGAPGANGGLGTLCNFC 66
          P PG P       G+PG NGG G    +C
Sbjct: 37 PVPGGPFFPRAQKGSPGVNGGPGDFTLYC 65


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 25  SRGQRLETQEIEEPSPGPPLGQDQGLGAPGANG 57
           SRG+R +     +P P   +GQD   G PG  G
Sbjct: 837 SRGERGQPGATGQPGPKGDVGQDGAPGIPGEKG 869


>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
            sapiens]
          Length = 1687

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%)

Query: 6    FDMWKDYFNLSQVVWALIASR----------GQRLETQEIEEPSPGPPL 44
            F+ WK  + L    W  + +R           +RL  ++  EP P PP+
Sbjct: 1332 FEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380


>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
            sapiens]
          Length = 1659

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%)

Query: 6    FDMWKDYFNLSQVVWALIASR----------GQRLETQEIEEPSPGPPL 44
            F+ WK  + L    W  + +R           +RL  ++  EP P PP+
Sbjct: 1332 FEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380


>gi|7662092 zinc finger protein 536 [Homo sapiens]
          Length = 1300

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 20/108 (18%)

Query: 36  EEPSPGPPLGQDQGLGAPGANG----------GLGTLCNFCKHNGESRHVYSSHQLKTPD 85
           + P P  P   D G  A  + G           LG+    C + G++    +SH LK   
Sbjct: 713 DSPHPSSPSSSDIGEEAGRSAGVQQPALLRDRSLGSAMKDCPYCGKTFR--TSHHLKVHL 770

Query: 86  GVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYRRSGRNSAG 133
            +      + Y CP C   G Q+ +LKY          + R  +N AG
Sbjct: 771 RIHTGE--KPYKCPHCDYAGTQSASLKY------HLERHHRERQNGAG 810


>gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo
           sapiens]
          Length = 262

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 18/78 (23%)

Query: 43  PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102
           P G D  L  P       TLC FC H       Y  H+         CPI        C 
Sbjct: 61  PTGMDCKLVGPE------TLC-FCTHR------YKQHKTDLEAIPQQCPIDLP-----CQ 102

Query: 103 ATGDQAHTLKYCPLNGGQ 120
            TG Q     Y PLNG Q
Sbjct: 103 VTGCQCRAYLYVPLNGSQ 120


>gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo
           sapiens]
          Length = 298

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 18/78 (23%)

Query: 43  PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCG 102
           P G D  L  P       TLC FC H       Y  H+         CPI        C 
Sbjct: 61  PTGMDCKLVGPE------TLC-FCTHR------YKQHKTDLEAIPQQCPIDLP-----CQ 102

Query: 103 ATGDQAHTLKYCPLNGGQ 120
            TG Q     Y PLNG Q
Sbjct: 103 VTGCQCRAYLYVPLNGSQ 120


>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
          Length = 133

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 37  EPSPGP---PLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPIL 93
           E SPG    P GQ  GL A  A   L     +      +  + +SH   T  G V CP  
Sbjct: 70  ELSPGLSHLPAGQGSGLAACHAQASL----RWAPCEARASRMGASH-CSTAPGPVHCPRA 124

Query: 94  RHYVCPV 100
             Y CPV
Sbjct: 125 EEYRCPV 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,094,304
Number of Sequences: 37866
Number of extensions: 367304
Number of successful extensions: 1890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 102
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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